RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 KIF26AQ9ULI4 1882 aaPredicted RBP10.04□□□□□ -0.8
USP54-204ENST00000422491 FRMPD3Q5JV73 1810 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 NUPL2O15504 423 aaKnown RBP10.04□□□□□ -0.8
USP54-204ENST00000422491 CXCL2P19875 107 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 MAPK9P45984 424 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 MMP15P51511 669 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 DGCR2P98153 550 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 BDH1Q02338 343 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 EIF2B5Q13144 721 aaKnown RBP10.04□□□□□ -0.8
USP54-204ENST00000422491 TCTE1Q5JU00 501 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 KIAA1161Q6NSJ0 714 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 HS6ST3Q8IZP7 471 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 OR6T1Q8NGN1 323 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 TRMT10AQ8TBZ6 339 aaKnown RBP10.04□□□□□ -0.8
USP54-204ENST00000422491 HAVCR2Q8TDQ0 301 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 RFKQ969G6 155 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 DACT3Q96B18 629 aaPredicted RBP10.04□□□□□ -0.8
USP54-204ENST00000422491 ECHDC3Q96DC8 303 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 WDR34Q96EX3 536 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 ACTR6Q9GZN1 396 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 ZNF275Q9NSD4 429 aaPredicted RBP10.04□□□□□ -0.8
USP54-204ENST00000422491 EMC3Q9P0I2 261 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 CD84Q9UIB8 345 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 ING1Q9UK53 422 aaPredicted RBP10.04□□□□□ -0.8
USP54-204ENST00000422491 CCL15-CCL14A0A0B4J2E2 113 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 PLSCR5A0PG75 271 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 GSAPA4D1B5 854 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 CARNS1A5YM72 827 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 SLC9B1P1A6NJY1 282 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 MT-ND4P03905 459 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 PROS1P07225 676 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 SPINT3P49223 89 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 RNF144AP50876 292 aaPredicted RBP10.04□□□□□ -0.8
USP54-204ENST00000422491 MAP2K5Q13163 448 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 CCL15Q16663 113 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 CLEC12AQ5QGZ9 265 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 FAM27D1Q5T7N8 215 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 RETSATQ6NUM9 610 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 C6orf120Q7Z4R8 191 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 STPG2Q8N412 459 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 OR51Q1Q8NH59 317 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 PRRC1Q96M27 445 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 KLF16Q9BXK1 252 aaPredicted RBP10.04□□□□□ -0.8
USP54-204ENST00000422491 BEX1Q9HBH7 125 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 OR6C2Q9NZP2 312 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 PPIL1Q9Y3C6 166 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 ZNF175Q9Y473 711 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 ANAPC1Q9H1A4 1944 aa10.04□□□□□ -0.8
USP54-204ENST00000422491 A0A087WUU8 490 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 J3QRE1 110 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 ZNF197O14709 1029 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 SURF4O15260 269 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 WNT1P04628 370 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 LPLP06858 475 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 FGF2P09038 288 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 HOXB3P14651 431 aaPredicted RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 POU3F2P20265 443 aaPredicted RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 KLF9Q13886 244 aaPredicted RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 SYPL1Q16563 259 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 RNASE12Q5GAN4 147 aaKnown RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 FAM198BQ6UWH4 519 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 RTN4RL1Q86UN2 441 aaPredicted RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 LILRA3Q8N6C8 439 aaPredicted RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 BBS1Q8NFJ9 593 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 OR4Q3Q8NH05 313 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 OR5P2Q8WZ92 322 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 LCORQ96JN0 433 aaPredicted RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 TIMP4Q99727 224 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 C7orf50Q9BRJ6 194 aaKnown RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 FAIM2Q9BWQ8 316 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 SORBS1Q9BX66 1292 aaKnown RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 SPRTNQ9H040 489 aaPredicted RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 C20orf85Q9H1P6 137 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 CD93Q9NPY3 652 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 CTPS2Q9NRF8 586 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 SIRT3Q9NTG7 399 aaPredicted RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 KLF2Q9Y5W3 355 aaPredicted RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 PLXND1Q9Y4D7 1925 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 OR6C65A6NJZ3 312 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 OR2AG2A6NM03 316 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 PEX14O75381 377 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 UBL3O95164 117 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 IGSF6O95976 241 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 CH25HO95992 272 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 CATP04040 527 aaKnown RBP10.03□□□□□ -0.8
USP54-204ENST00000422491 ALDOBP05062 364 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 NPPBP16860 134 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 DRD5P21918 477 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 HTR1FP30939 366 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 TRIM23P36406 574 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 PREPP48147 710 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 TBPL1P62380 186 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 TLE2Q04725 743 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 GRIN2CQ14957 1233 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 CLVS2Q5SYC1 327 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 Q6ZTK2 550 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 CPXM2Q8N436 756 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 SIRT6Q8N6T7 355 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 ANKRD53Q8N9V6 530 aa10.03□□□□□ -0.8
USP54-204ENST00000422491 MOSPD2Q8NHP6 518 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms