RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 ZNF639Q9UID6 485 aa13.12□□□□□ -0.31
COL6A1-201ENST00000361866 NUP50Q9UKX7 468 aa13.12□□□□□ -0.31
COL6A1-201ENST00000361866 NDRG2Q9UN36 371 aaKnown RBP13.12□□□□□ -0.31
COL6A1-201ENST00000361866 PCDHGB1Q9Y5G3 927 aa13.12□□□□□ -0.31
COL6A1-201ENST00000361866 IGLON5A6NGN9 336 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 A8MUA0 341 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 PDCD5O14737 125 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 POLR1CO15160 346 aaPredicted RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 ARPC5O15511 151 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 EMC8O43402 210 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 C1orf105O95561 183 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 PAHP00439 452 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 HSD17B2P37059 387 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 TIAL1Q01085 375 aaKnown RBP eCLIP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 TAP2Q03519 686 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 CRYZQ08257 329 aaKnown RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 ZC3H14Q6PJT7 736 aaKnown RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 OR6T1Q8NGN1 323 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 OR9A2Q8NGT5 310 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 ZNF296Q8WUU4 475 aaPredicted RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 TM9SF4Q92544 642 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 C16orf58Q96GQ5 468 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 BACE2Q9Y5Z0 518 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 OR14I1A6ND48 311 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 UNC119BA6NIH7 251 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 WASH3PC4AMC7 463 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 AKR7A2O43488 359 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 B4GALT2O60909 372 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 ECDO95905 644 aaPredicted RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 MT-ND4P03905 459 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 ELAVL4P26378 380 aaKnown RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 GABRA3P34903 492 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 ARFIP1P53367 373 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 RAB40BQ12829 278 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 C6orf132Q5T0Z8 1188 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 LIPIQ6XZB0 460 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 KRT77Q7Z794 578 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 SLC9B2Q86UD5 537 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 TMPRSS12Q86WS5 348 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 TRIM43Q96BQ3 446 aaPredicted RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 LGR4Q9BXB1 951 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 SRA1Q9HD15 236 aaKnown RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 MYNNQ9NPC7 610 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 TEX10Q9NXF1 929 aaPredicted RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 SLC7A7Q9UM01 511 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 CACNG2Q9Y698 323 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 FAM186AA6NE01 2351 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 C5orf51A6NDU8 294 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 TGM5O43548 720 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 ALDOBP05062 364 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 S100A6P06703 90 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 FBXO45P0C2W1 286 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 RPS5P46782 204 aaKnown RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 ARMC10Q8N2F6 343 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 BOLLQ8N9W6 283 aaKnown RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 FBXO15Q8NCQ5 510 aaPredicted RBP13.11□□□□□ -0.31
COL6A1-201ENST00000361866 ZNF248Q8NDW4 579 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 UBTD2Q8WUN7 234 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 ARSGQ96EG1 525 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 SLC41A3Q96GZ6 507 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 PCDHGB7Q9Y5F8 929 aa13.11□□□□□ -0.31
COL6A1-201ENST00000361866 SHC1P29353 583 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 PSPHP78330 225 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 ILKQ13418 452 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 ALG1LQ6GMV1 187 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 FOXRED2Q8IWF2 684 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 OR4K14Q8NGD5 310 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 CASTOR1Q8WTX7 329 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 DNAJA4Q8WW22 397 aaPredicted RBP13.1□□□□□ -0.31
COL6A1-201ENST00000361866 CASD1Q96PB1 797 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 PSD2Q9BQI7 771 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 SLC46A2Q9BY10 475 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 SLC28A3Q9HAS3 691 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 A3GALT2U3KPV4 340 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 PCM1Q15154 2024 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 FOCADQ5VW36 1801 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 CCDC85CA6NKD9 419 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 CCL5P13501 91 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 CERS1P27544 350 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 OR3A3P47888 321 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 DNASE1L1P49184 302 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 CHRNEQ04844 493 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 PUM1Q14671 1186 aaKnown RBP eCLIP13.1□□□□□ -0.31
COL6A1-201ENST00000361866 GFOD2Q3B7J2 385 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 TMC8Q8IU68 726 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 SAMD14Q8IZD0 417 aaPredicted RBP13.1□□□□□ -0.31
COL6A1-201ENST00000361866 JAGN1Q8N5M9 183 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 SIMC1Q8NDZ2 872 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 OR52I1Q8NGK6 324 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 OR5J2Q8NH18 312 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 S100A13Q99584 98 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 SLC25A18Q9H1K4 315 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 CD93Q9NPY3 652 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 MARCH5Q9NX47 278 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 PLEKHA6Q9Y2H5 1048 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 NOP16Q9Y3C1 178 aaKnown RBP13.1□□□□□ -0.31
COL6A1-201ENST00000361866 PTPRFP10586 1907 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 OR2AT4A6NND4 320 aa13.1□□□□□ -0.31
COL6A1-201ENST00000361866 C1QCP02747 245 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms