RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 CBFBQ13951 182 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NLRC3Q7RTR2 1065 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SIAH1Q8IUQ4 282 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ADGRF3Q8IZF5 1079 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ULK4Q96C45 1275 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 OR51E2Q9H255 320 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NIT2Q9NQR4 276 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 A0A096LPI6 279 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 A0A1W2PPL8 197 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 LCHNA4D1U4 455 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 STAG3L1P0CL83 205 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RPS26P62854 115 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ST3GAL4Q11206 333 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NBPF12Q5TAG4 269 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 C19orf47Q8N9M1 422 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SLC25A21Q9BQT8 299 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 KCNK12Q9HB15 430 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 FABP1P07148 127 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 IL2RBP14784 551 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GLULP15104 373 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ACKR1Q16570 336 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NOXA1Q86UR1 476 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 OR9A1PQ8NGU1 263 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RHOVQ96L33 236 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RGCCQ9H4X1 137 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CARS2Q9HA77 564 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 A0A0A6YYJ9 748 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SERTM1A2A2V5 107 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SGK494L7N484 410 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 MYF5P13349 255 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RFC2P35250 354 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RPS9P46781 194 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 WSCD2Q2TBF2 565 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RTL10Q7L3V2 364 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 OR6V1Q8N148 313 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SPICQ8N5J4 248 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GATSQ8NAP1 163 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 MRPS31Q92665 395 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 AKIP1Q9NQ31 210 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CYTIPO60759 359 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PSMB4P28070 264 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SLC10A2Q12908 348 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SNRNP35Q16560 246 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 AHSA2Q719I0 299 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 MEIOBQ8N635 442 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF764Q96H86 408 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 LRR1Q96L50 414 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SPANXDQ9BXN6 97 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RPH3ALQ9UNE2 315 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GJE1A6NN92 205 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 OR2AT4A6NND4 320 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 C9orf40Q8IXQ3 194 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ULBP1Q9BZM6 244 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SLC5A7Q9GZV3 580 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 KRCC1Q9NPI7 259 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SLC2A9Q9NRM0 540 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SPO11Q9Y5K1 396 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 TECTAO75443 2155 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SMAD7O15105 426 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 TRAPPC6AO75865 159 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PRPS2P11908 318 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ACVR1BP36896 505 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CSNK1EP49674 416 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SCNN1GP51170 649 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SERPINA11Q86U17 422 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PIM3Q86V86 326 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 BSCL2Q96G97 398 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NDC1Q9BTX1 674 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PITHD1Q9GZP4 211 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 WDCPQ9H6R7 721 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ADH1CP00326 375 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 F12P00748 615 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 TBPP20226 339 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 TGM1P22735 817 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CARD17Q5XLA6 110 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 LRRC28Q86X40 367 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 EXTL1Q92935 676 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ANKRD34BA5PLL1 514 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM63AO94886 807 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PPP3R1P63098 170 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 LIPEQ05469 1076 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 KCNJ11Q14654 390 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 OVOS1Q6IE37 1185 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ATG4CQ96DT6 458 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 C12orf57Q99622 126 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ALX4Q9H161 411 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 FEM1BQ9UK73 627 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PRSS47A8MTI9 375 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 KIAA1324LA8MWY0 1029 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 B4E171 279 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CMPK1P30085 196 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 MS4A15Q8N5U1 240 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 UBL7Q96S82 380 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GPATCH2Q9NW75 528 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ZNRF3Q9ULT6 936 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 YDJCA8MPS7 323 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NPIPB8E9PQR5 432 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 H3BMQ9 156 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GPR182O15218 404 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 TAS2R43P59537 309 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms