RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 WNT1P04628 370 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 CBSLP0DN79 551 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 CD70P32970 193 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 CBSP35520 551 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 HYAL4Q2M3T9 481 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 TXNDC8Q6A555 127 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 NLRC3Q7RTR2 1065 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 ARL14EPQ8N8R7 260 aaPredicted RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 ZG16BQ96DA0 208 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 SCMH1Q96GD3 660 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 NARS2Q96I59 477 aaKnown RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 MACROD1Q9BQ69 325 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 HELZP42694 1942 aaKnown RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 SPEGQ15772 3267 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 FAM170BA6NMN3 283 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 H3BSH0 61 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 FZD7O75084 574 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 UCHL1P09936 223 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 TRIM23P36406 574 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 FLT3LGP49771 235 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 HTRA3P83110 453 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 KCNC3Q14003 757 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 OPCMLQ14982 345 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 LRFN4Q6PJG9 635 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 CEACAM19Q7Z692 300 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 GPAT4Q86UL3 456 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 KRT78Q8N1N4 520 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 SIRT6Q8N6T7 355 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 FBXO15Q8NCQ5 510 aaPredicted RBP13.49□□□□□ -0.25
SDC1-201ENST00000254351 MED18Q9BUE0 208 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 C2orf49Q9BVC5 232 aaPredicted RBP13.49□□□□□ -0.25
SDC1-201ENST00000254351 OR51I1Q9H343 314 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 MRPL39Q9NYK5 338 aaKnown RBP13.49□□□□□ -0.25
SDC1-201ENST00000254351 H2AFY2Q9P0M6 372 aaPredicted RBP13.49□□□□□ -0.25
SDC1-201ENST00000254351 KCND3Q9UK17 655 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 KCNMB2Q9Y691 235 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 TP53BP1Q12888 1972 aaPredicted RBP13.49□□□□□ -0.25
SDC1-201ENST00000254351 hCG_1807616A0A1W2PRN6 198 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 STK25O00506 426 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 PPM1DO15297 605 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 ARPC5O15511 151 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 LPLP06858 475 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 ACP5P13686 325 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 FNTBP49356 437 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 GBX2P52951 348 aaPredicted RBP13.49□□□□□ -0.25
SDC1-201ENST00000254351 GAS1P54826 345 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 TAS2R41P59536 307 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 AP1S1P61966 158 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 RAB40BQ12829 278 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 SNTB2Q13425 540 aaKnown RBP13.49□□□□□ -0.25
SDC1-201ENST00000254351 ARHGAP15Q53QZ3 475 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 RETSATQ6NUM9 610 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 CPOQ8IVL8 374 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 DOK4Q8TEW6 326 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 ASB12Q8WXK4 309 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 ZSWIM3Q96MP5 696 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 F2RL3Q96RI0 385 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 EMC7Q9NPA0 242 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 SLC35C2Q9NQQ7 365 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 ZNF69Q9UC07 566 aa13.49□□□□□ -0.25
SDC1-201ENST00000254351 H0YIV9 168 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 CBX7O95931 251 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 TFP02787 698 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 IFNA16P05015 189 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 PRKCZQ05513 592 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 ZNF155Q12901 538 aaPredicted RBP13.48□□□□□ -0.25
SDC1-201ENST00000254351 ZNF750Q32MQ0 723 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 PLBD1Q6P4A8 553 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 GPALPP1Q8IXQ4 340 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 KLHL36Q8N4N3 616 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 ARIH2OSQ8N7S6 290 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 CHST14Q8NCH0 376 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 OR52H1Q8NGJ2 320 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 OR5M3Q8NGP4 307 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 ZNF354BQ96LW1 612 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 UROC1Q96N76 676 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 ERMAPQ96PL5 475 aaPredicted RBP13.48□□□□□ -0.25
SDC1-201ENST00000254351 OR51V1Q9H2C8 321 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 TTYH1Q9H313 450 aaPredicted RBP13.48□□□□□ -0.25
SDC1-201ENST00000254351 THSD7BQ9C0I4 1608 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 FEZF1A0PJY2 475 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 PRAMEF27A3QJZ7 478 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 HMGN4O00479 90 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 GMDSO60547 372 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 C8orf89P0DMQ9 161 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 HK1P19367 917 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 AP1S2P56377 157 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 GSG1Q2KHT4 349 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 LYPLAL1Q5VWZ2 237 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 VASNQ6EMK4 673 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 FAM198BQ6UWH4 519 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 NHLRC1Q6VVB1 395 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 SERINC5Q86VE9 423 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 CFAP206Q8IYR0 622 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 RPLP0P6Q8NHW5 317 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 ZNF480Q8WV37 535 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 THAP4Q8WY91 577 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 FCRL1Q96LA6 429 aa13.48□□□□□ -0.25
SDC1-201ENST00000254351 RIOK2Q9BVS4 552 aaKnown RBP13.48□□□□□ -0.25
SDC1-201ENST00000254351 CCDC86Q9H6F5 360 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms