RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 SDR39U1Q9NRG7 319 aaPredicted RBP16.38■□□□□ 0.21
CLN3-247ENST00000636351 SIRT3Q9NTG7 399 aaPredicted RBP16.38■□□□□ 0.21
CLN3-247ENST00000636351 FAM120CQ9NX05 1096 aaKnown RBP16.38■□□□□ 0.21
CLN3-247ENST00000636351 TINAGQ9UJW2 476 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 NPFFR2Q9Y5X5 522 aa16.38■□□□□ 0.21
CLN3-247ENST00000636351 G3V3Y1 287 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 CPSF4O95639 269 aaKnown RBP16.37■□□□□ 0.21
CLN3-247ENST00000636351 P04436 131 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 NCF2P19878 526 aaPredicted RBP16.37■□□□□ 0.21
CLN3-247ENST00000636351 DRD5P21918 477 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 ABCD3P28288 659 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 WNT3P56703 355 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 GPR85P60893 370 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 HBA1P69905 142 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 ADORA2A-AS1P86434 159 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 TP53BP2Q13625 1128 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 ZNF791Q3KP31 576 aaPredicted RBP16.37■□□□□ 0.21
CLN3-247ENST00000636351 PAOXQ6QHF9 649 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 LYPD8Q6UX82 237 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 NPSR1Q6W5P4 371 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 GOLM1Q8NBJ4 401 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 OR10G3Q8NGC4 313 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 OR56A1Q8NGH5 318 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 OR9I1Q8NGQ6 314 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 OR5AK3PQ8NH89 298 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 FAM120BQ96EK7 910 aaKnown RBP16.37■□□□□ 0.21
CLN3-247ENST00000636351 LURAP1Q96LR2 239 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 TMEM120AQ9BXJ8 343 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 RYDENQ9NUL5 291 aaKnown RBP16.37■□□□□ 0.21
CLN3-247ENST00000636351 TRIM33Q9UPN9 1127 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 GPR55Q9Y2T6 319 aaPredicted RBP16.37■□□□□ 0.21
CLN3-247ENST00000636351 PCDHGB6Q9Y5F9 930 aa16.37■□□□□ 0.21
CLN3-247ENST00000636351 MYO7BQ6PIF6 2116 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 RNF103-CHMP3A0A140T963 221 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 PRSS51A0A1B0GVH4 220 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 TP53I11O14683 189 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 PSMG1O95456 288 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 PGRP06401 933 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 CCL3P10147 92 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 ESRRAP11474 423 aaPredicted RBP16.36■□□□□ 0.21
CLN3-247ENST00000636351 IL12BP29460 328 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 CCT3P49368 545 aaKnown RBP16.36■□□□□ 0.21
CLN3-247ENST00000636351 PRIM2P49643 509 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 FBXW4P57775 412 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 TIGD2Q4W5G0 525 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 XKRXQ6PP77 449 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.36■□□□□ 0.21
CLN3-247ENST00000636351 SFXN5Q8TD22 340 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 STON2Q8WXE9 905 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 SLC9A6Q92581 669 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 TMBIM1Q969X1 311 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 OR52E6Q96RD3 313 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 TSPAN10Q9H1Z9 355 aaPredicted RBP16.36■□□□□ 0.21
CLN3-247ENST00000636351 Q9N2J8 555 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 SACM1LQ9NTJ5 587 aa16.36■□□□□ 0.21
CLN3-247ENST00000636351 NUP214P35658 2090 aaPredicted RBP16.35■□□□□ 0.21
CLN3-247ENST00000636351 NR5A2O00482 541 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 TO15178 435 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 REM1O75628 298 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 PPM1BO75688 479 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 IL6P05231 212 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 CT45A8P0DMV1 189 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 CT45A9P0DMV2 189 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 RFX3P48380 749 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 MEOX1P50221 254 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 POLR2JP52435 117 aaKnown RBP16.35■□□□□ 0.21
CLN3-247ENST00000636351 PSPHP78330 225 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 RPP38P78345 283 aaKnown RBP16.35■□□□□ 0.21
CLN3-247ENST00000636351 SQLEQ14534 574 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 LASP1Q14847 261 aaKnown RBP16.35■□□□□ 0.21
CLN3-247ENST00000636351 NTRK2Q16620 822 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 VPS26BQ4G0F5 336 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 CT45A2Q5DJT8 189 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 PRAMEF20Q5VT98 475 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 MFSD12Q6NUT3 480 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 BHLHB9Q6PI77 547 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 CDRT4Q8N9R6 151 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 MOAP1Q96BY2 351 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 OTUB1Q96FW1 271 aaPredicted RBP16.35■□□□□ 0.21
CLN3-247ENST00000636351 GPR137Q96N19 417 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 YIPF4Q9BSR8 244 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 LMF2Q9BU23 707 aaKnown RBP16.35■□□□□ 0.21
CLN3-247ENST00000636351 TRIM8Q9BZR9 551 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 NTMQ9P121 344 aa16.35■□□□□ 0.21
CLN3-247ENST00000636351 FAF1Q9UNN5 650 aaPredicted RBP16.35■□□□□ 0.21
CLN3-247ENST00000636351 FAM234BA2RU67 622 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 KLRC4-KLRK1H3BQV0 150 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 PEX1O43933 1283 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 ALOX5P09917 674 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 GABRA3P34903 492 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 SMSP52788 366 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 ARFIP2P53365 341 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 GYS2P54840 703 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 PHC1P78364 1004 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 PSG6Q00889 435 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 ALDH6A1Q02252 535 aaKnown RBP16.34■□□□□ 0.21
CLN3-247ENST00000636351 CDSNQ15517 529 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 SLC22A10Q63ZE4 541 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 CGB2Q6NT52 195 aa16.34■□□□□ 0.21
CLN3-247ENST00000636351 DNAJC14Q6Y2X3 702 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms