RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 REM1O75628 298 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 PPM1BO75688 479 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 SLC22A3O75751 556 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 CBX6O95503 412 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 VIMP08670 466 aaKnown RBP12.37□□□□□ -0.43
LINC00540-202ENST00000616974 DRD5P21918 477 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 CASP3P42574 277 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 EXOSC6Q5RKV6 272 aaKnown RBP12.37□□□□□ -0.43
LINC00540-202ENST00000616974 RPUSD3Q6P087 351 aaKnown RBP12.37□□□□□ -0.43
LINC00540-202ENST00000616974 RTL4Q6ZR62 310 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 FGD2Q7Z6J4 655 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 OR5P2Q8WZ92 322 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 NR4A3Q92570 626 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 CDS1Q92903 461 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 DOCK7Q96N67 2140 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 RILPQ96NA2 401 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 TTTY12Q9BZ98 90 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 TRIM8Q9BZR9 551 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 NTMQ9P121 344 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 PRODH2Q9UF12 536 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 PRAMEF27A3QJZ7 478 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 EMC8O43402 210 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 IDO1P14902 403 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 CAPN3P20807 821 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 PTPN6P29350 595 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 MAGEA5P43359 124 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 MAN2A2P49641 1150 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 MLC1Q15049 377 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 PDCD4Q53EL6 469 aaKnown RBP12.36□□□□□ -0.43
LINC00540-202ENST00000616974 CMPK2Q5EBM0 449 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 SLC22A10Q63ZE4 541 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 SLC2A7Q6PXP3 512 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 FAM180AQ6UWF9 173 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 GK5Q6ZS86 529 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 C10orf111Q8N326 155 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 ZFP62Q8NB50 900 aaPredicted RBP12.36□□□□□ -0.43
LINC00540-202ENST00000616974 TMEM178AQ8NBL3 297 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 C17orf47Q8NEP4 570 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 GPR151Q8TDV0 419 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 SLC35A4Q96G79 324 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 JSRP1Q96MG2 331 aaPredicted RBP12.36□□□□□ -0.43
LINC00540-202ENST00000616974 GNRHR2Q96P88 292 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 OR52E6Q96RD3 313 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 LMF2Q9BU23 707 aaKnown RBP12.36□□□□□ -0.43
LINC00540-202ENST00000616974 DEFB127Q9H1M4 99 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 ZNF385DQ9H6B1 395 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 TIMMDC1Q9NPL8 285 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 CCDC167Q9P0B6 97 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 OR10H1Q9Y4A9 318 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 PKDREJQ9NTG1 2253 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 MED12LQ86YW9 2145 aa12.36□□□□□ -0.43
LINC00540-202ENST00000616974 CENPVL1A0A0U1RR11 272 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 J3QKU1 62 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 RNASET2O00584 256 aaKnown RBP12.35□□□□□ -0.43
LINC00540-202ENST00000616974 TO15178 435 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 TGDSO95455 350 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 CYP4B1P13584 511 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 S100A3P33764 101 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 VPS26BQ4G0F5 336 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 COX20Q5RI15 118 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 NCCRP1Q6ZVX7 275 aaPredicted RBP12.35□□□□□ -0.43
LINC00540-202ENST00000616974 ACAD11Q709F0 780 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 KIRREL3Q8IZU9 778 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 TAGAPQ8N103 731 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 SLC34A3Q8N130 599 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 ZFP28Q8NHY6 868 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 HOXB13Q92826 284 aaPredicted RBP12.35□□□□□ -0.43
LINC00540-202ENST00000616974 RAB8BQ92930 207 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 ERP27Q96DN0 273 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 MS4A4EQ96PG1 132 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 CCDC134Q9H6E4 229 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 SACM1LQ9NTJ5 587 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 ATAD3AQ9NVI7 634 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 CBLCQ9ULV8 474 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 RNF103-CHMP3A0A140T963 221 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 PRSS51A0A1B0GVH4 220 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 GNB5O14775 395 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 GMFGO60234 142 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 UNC5CO95185 931 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 ZNF24P17028 368 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 NCF2P19878 526 aaPredicted RBP12.35□□□□□ -0.43
LINC00540-202ENST00000616974 TCEA1P23193 301 aaKnown RBP12.35□□□□□ -0.43
LINC00540-202ENST00000616974 KCNJ2P63252 427 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 FUT5Q11128 374 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 UBAP2LQ14157 1087 aaKnown RBP12.35□□□□□ -0.43
LINC00540-202ENST00000616974 PAGE3Q5JUK9 113 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 TNFAIP8L2Q6P589 184 aaPredicted RBP12.35□□□□□ -0.43
LINC00540-202ENST00000616974 HORMAD2Q8N7B1 307 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 GOLM1Q8NBJ4 401 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 SPPL2AQ8TCT8 520 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 HSPBAP1Q96EW2 488 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 GIN1Q9NXP7 522 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 SH3BGRL2Q9UJC5 107 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 KLF13Q9Y2Y9 288 aaPredicted RBP12.35□□□□□ -0.43
LINC00540-202ENST00000616974 PCDHGB6Q9Y5F9 930 aa12.35□□□□□ -0.43
LINC00540-202ENST00000616974 UNC79Q9P2D8 2635 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 LRBAP50851 2863 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 NR5A2O00482 541 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 COQ9O75208 318 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 SEMA7AO75326 666 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms