RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 CRIM1Q9NZV1 1036 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 GIMAP2Q9UG22 337 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 EXO1Q9UQ84 846 aaKnown RBP11.42□□□□□ -0.58
UPF1-203ENST00000594504 NPFFR2Q9Y5X5 522 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 F8P00451 2351 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 C2orf72A6NCS6 295 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 HSPB2A8KAH6 182 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 SLCO1B7G3V0H7 640 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 SYT5O00445 386 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 GNB5O14775 395 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 HDAC3O15379 428 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 TBX19O60806 448 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 EPPINO95925 133 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 PRPS2P11908 318 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 DDX5P17844 614 aaKnown RBP11.41□□□□□ -0.58
UPF1-203ENST00000594504 NTSP30990 170 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 DUSP2Q05923 314 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 CRYZQ08257 329 aaKnown RBP11.41□□□□□ -0.58
UPF1-203ENST00000594504 MAP4K2Q12851 820 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 HSPB2Q16082 182 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 PRICKLE4Q2TBC4 344 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 EIPR1Q53HC9 387 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 HLA-DQA1Q5Y7H0 255 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 FAM180BQ6P0A1 224 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 POMZP3Q6PJE2 187 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 LRRC34Q8IZ02 419 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 TAGAPQ8N103 731 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 ZNF615Q8N8J6 731 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 SIMC1Q8NDZ2 872 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 ZNF675Q8TD23 568 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 LRRC8CQ8TDW0 803 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 DYDC1Q8WWB3 177 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 ADIPOR1Q96A54 375 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 CTHRC1Q96CG8 243 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 ERP27Q96DN0 273 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 MTERF3Q96E29 417 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 RILPQ96NA2 401 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 BBS4Q96RK4 519 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 C1orf50Q9BV19 199 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 NUF2Q9BZD4 464 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 BRINP2Q9C0B6 783 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 REEP4Q9H6H4 257 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 MEAF6Q9HAF1 191 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 RYDENQ9NUL5 291 aaKnown RBP11.41□□□□□ -0.58
UPF1-203ENST00000594504 INTS9Q9NV88 658 aaKnown RBP11.41□□□□□ -0.58
UPF1-203ENST00000594504 QPCTLQ9NXS2 382 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 ASIC5Q9NY37 505 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 MAT2BQ9NZL9 334 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 BAIAP2L1Q9UHR4 511 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 EIF3LQ9Y262 564 aaKnown RBP11.41□□□□□ -0.58
UPF1-203ENST00000594504 DTX4Q9Y2E6 619 aa11.41□□□□□ -0.58
UPF1-203ENST00000594504 TEP1Q99973 2627 aaKnown RBP11.4□□□□□ -0.58
UPF1-203ENST00000594504 TRPC5OSA6NMA1 111 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 AHRRA9YTQ3 701 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 MYO1GB0I1T2 1018 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 TP53I11O14683 189 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 AKAP10O43572 662 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 SLITRK5O94991 958 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 CD99P14209 185 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 S1PR1P21453 382 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 CEACAM8P31997 349 aaPredicted RBP11.4□□□□□ -0.58
UPF1-203ENST00000594504 HPCAL1P37235 193 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 RPL3P39023 403 aaKnown RBP11.4□□□□□ -0.58
UPF1-203ENST00000594504 CASP3P42574 277 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 EMX2Q04743 252 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 MGAT2Q10469 447 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 PDE7AQ13946 482 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 TOMM20Q15388 145 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 LTB4RQ15722 352 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 NNATQ16517 81 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 ACSF3Q4G176 576 aaPredicted RBP11.4□□□□□ -0.58
UPF1-203ENST00000594504 WIPI1Q5MNZ9 446 aaPredicted RBP11.4□□□□□ -0.58
UPF1-203ENST00000594504 DCST1Q5T197 706 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 IL23RQ5VWK5 629 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 FAM111BQ6SJ93 734 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 R3HCC1LQ7Z5L2 792 aaKnown RBP11.4□□□□□ -0.58
UPF1-203ENST00000594504 CCDC116Q8IYX3 515 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 DND1Q8IYX4 353 aaKnown RBP11.4□□□□□ -0.58
UPF1-203ENST00000594504 FAM9CQ8IZT9 166 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 ADCY4Q8NFM4 1077 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 CLHC1Q8NHS4 586 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 GFM2Q969S9 779 aaKnown RBP11.4□□□□□ -0.58
UPF1-203ENST00000594504 TP53INP1Q96A56 240 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 PPCDCQ96CD2 204 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 PPP1R36Q96LQ0 422 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 ZNF597Q96LX8 424 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 C7orf26Q96N11 449 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 TMUB1Q9BVT8 246 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 ANGPTL4Q9BY76 406 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 AKTIPQ9H8T0 292 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 SLC24A3Q9HC58 644 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 RASSF1Q9NS23 344 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 NOP53Q9NZM5 478 aaKnown RBP11.4□□□□□ -0.58
UPF1-203ENST00000594504 B4GALT7Q9UBV7 327 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 MARCOQ9UEW3 520 aaPredicted RBP11.4□□□□□ -0.58
UPF1-203ENST00000594504 ZNF639Q9UID6 485 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 CAMK2AQ9UQM7 478 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 CFL2Q9Y281 166 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 PLEKHA6Q9Y2H5 1048 aa11.4□□□□□ -0.58
UPF1-203ENST00000594504 DCHS2Q6V1P9 2916 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms