RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 C4orf51C9J302 202 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 CLDN4O14493 209 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 PGRMC2O15173 223 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 CLOCKO15516 846 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 EMC8O43402 210 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 OR2B3O76000 313 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 PRKD3O94806 890 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 SLITRK5O94991 958 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 AGR2O95994 175 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 CST1P01037 141 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 RNH1P13489 461 aaKnown RBP9.46□□□□□ -0.9
SS18-207ENST00000577636 ALAS2P22557 587 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 FEN1P39748 380 aaKnown RBP9.46□□□□□ -0.9
SS18-207ENST00000577636 XKP51811 444 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 EMP3P54852 163 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 RAB38P57729 211 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 CDK6Q00534 326 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 C18orf63Q68DL7 685 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 ZBTB49Q6ZSB9 765 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 CCDC116Q8IYX3 515 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 LILRA2Q8N149 483 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 CLEC4FQ8N1N0 589 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 C7orf57Q8NEG2 295 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 VPS50Q96JG6 964 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 BTBD9Q96Q07 612 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 ZNF607Q96SK3 696 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 WDR77Q9BQA1 342 aaPredicted RBP9.46□□□□□ -0.9
SS18-207ENST00000577636 SPATA5L1Q9BVQ7 753 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 TRIM45Q9H8W5 580 aaPredicted RBP9.46□□□□□ -0.9
SS18-207ENST00000577636 CACYBPQ9HB71 228 aaKnown RBP9.46□□□□□ -0.9
SS18-207ENST00000577636 FAM60AQ9NP50 221 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 A4GALTQ9NPC4 353 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 TRPC4Q9UBN4 977 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 DNAJB9Q9UBS3 223 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 CES1P1Q9UKY3 287 aa9.46□□□□□ -0.9
SS18-207ENST00000577636 A0A1B0GUH1 482 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 HYKKA2RU49 373 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 ZNF860A6NHJ4 632 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 CNOT3O75175 753 aaKnown RBP9.45□□□□□ -0.9
SS18-207ENST00000577636 E2F6O75461 281 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 TNFRSF21O75509 655 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 CTSBP07858 339 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 C8orf89P0DMQ9 161 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 EDN3P14138 238 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 PORP16435 677 aaPredicted RBP9.45□□□□□ -0.9
SS18-207ENST00000577636 ZNF23P17027 643 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 ITGA2P17301 1181 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 CDK9P50750 372 aaKnown RBP9.45□□□□□ -0.9
SS18-207ENST00000577636 PRKAG1P54619 331 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 AIMP2Q13155 320 aaKnown RBP9.45□□□□□ -0.9
SS18-207ENST00000577636 MED21Q13503 144 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 RUNX2Q13950 521 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 FAM53BQ14153 422 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 ADRM1Q16186 407 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 PRSS53Q2L4Q9 553 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 ATAD3BQ5T9A4 648 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 AGAP7PQ5VUJ5 663 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 ZNF385CQ66K41 422 aaPredicted RBP9.45□□□□□ -0.9
SS18-207ENST00000577636 REEP3Q6NUK4 255 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 FAM180BQ6P0A1 224 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 ENPP6Q6UWR7 440 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 RNF111Q6ZNA4 994 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 EIF3MQ7L2H7 374 aaKnown RBP9.45□□□□□ -0.9
SS18-207ENST00000577636 PPP1R32Q7Z5V6 425 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 AMIGO2Q86SJ2 522 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 KRT73Q86Y46 540 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 PTOV1Q86YD1 416 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 GALNT4Q8N4A0 578 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 OR2Y1Q8NGV0 311 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 NFKBIDQ8NI38 313 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 FAR1Q8WVX9 515 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 RASSF5Q8WWW0 418 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 TPD52L3Q96J77 140 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 MAGED4Q96JG8 741 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 AGAP4Q96P64 663 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 BARD1Q99728 777 aaKnown RBP9.45□□□□□ -0.9
SS18-207ENST00000577636 CIB1Q99828 191 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 NDC1Q9BTX1 674 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 SYNPO2LQ9H987 977 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 DDX18Q9NVP1 670 aaKnown RBP9.45□□□□□ -0.9
SS18-207ENST00000577636 KCMF1Q9P0J7 381 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 PTGFRNQ9P2B2 879 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 P2RX2Q9UBL9 471 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 RAB26Q9ULW5 256 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 CDC14AQ9UNH5 594 aa9.45□□□□□ -0.9
SS18-207ENST00000577636 DIDO1Q9BTC0 2240 aaKnown RBP9.44□□□□□ -0.9
SS18-207ENST00000577636 SAC3D1A6NKF1 404 aa9.44□□□□□ -0.9
SS18-207ENST00000577636 DUXAA6NLW8 204 aa9.44□□□□□ -0.9
SS18-207ENST00000577636 SGK494L7N484 410 aa9.44□□□□□ -0.9
SS18-207ENST00000577636 HCRTR1O43613 425 aa9.44□□□□□ -0.9
SS18-207ENST00000577636 OR10H2O60403 315 aa9.44□□□□□ -0.9
SS18-207ENST00000577636 RDH16O75452 317 aa9.44□□□□□ -0.9
SS18-207ENST00000577636 JRKO75564 520 aa9.44□□□□□ -0.9
SS18-207ENST00000577636 PRKRAO75569 313 aaKnown RBP9.44□□□□□ -0.9
SS18-207ENST00000577636 SERPINB7O75635 380 aa9.44□□□□□ -0.9
SS18-207ENST00000577636 NSA2O95478 260 aaKnown RBP9.44□□□□□ -0.9
SS18-207ENST00000577636 GPR75O95800 540 aa9.44□□□□□ -0.9
SS18-207ENST00000577636 FABP3P05413 133 aa9.44□□□□□ -0.9
SS18-207ENST00000577636 UMODP07911 640 aa9.44□□□□□ -0.9
SS18-207ENST00000577636 RPSAP08865 295 aaKnown RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms