RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.95□□□□□ -0.82
VPS53-207ENST00000570510 TBC1D1Q86TI0 1168 aaPredicted RBP9.95□□□□□ -0.82
VPS53-207ENST00000570510 CCDC25Q86WR0 208 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 CTAGE3PQ8IX95 158 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 WDSUB1Q8N9V3 476 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 C17orf47Q8NEP4 570 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 ADCY4Q8NFM4 1077 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 OR4K17Q8NGC6 315 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 SGMS2Q8NHU3 365 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 ZMYND19Q96E35 227 aaPredicted RBP9.95□□□□□ -0.82
VPS53-207ENST00000570510 OMA1Q96E52 524 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 NODALQ96S42 347 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 MS4A8Q9BY19 250 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 NXF5Q9H1B4 397 aaKnown RBP9.95□□□□□ -0.82
VPS53-207ENST00000570510 RNF122Q9H9V4 155 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 CXorf21Q9HAI6 301 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 SMYD2Q9NRG4 433 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 EHD3Q9NZN3 535 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 BCAP29Q9UHQ4 241 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 GPR52Q9Y2T5 361 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 ZNF175Q9Y473 711 aa9.95□□□□□ -0.82
VPS53-207ENST00000570510 A0A087WUV0 522 aaPredicted RBP9.94□□□□□ -0.82
VPS53-207ENST00000570510 LOC100289279A0A1B0GTE1 492 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 CXorf49A8MYA2 514 aaPredicted RBP9.94□□□□□ -0.82
VPS53-207ENST00000570510 ZNF500O60304 480 aaPredicted RBP9.94□□□□□ -0.82
VPS53-207ENST00000570510 STK16O75716 305 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 SCELO95171 688 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 CLPSP04118 112 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 NT5EP21589 574 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 ECHS1P30084 290 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 KRT20P35900 424 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 CHIT1Q13231 466 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 ACAP2Q15057 778 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 RAB35Q15286 201 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 TGFBIQ15582 683 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 TSNQ15631 228 aaKnown RBP9.94□□□□□ -0.82
VPS53-207ENST00000570510 PDK4Q16654 411 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 FAM83EQ2M2I3 478 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 KHDRBS2Q5VWX1 349 aaKnown RBP9.94□□□□□ -0.82
VPS53-207ENST00000570510 DNM1P46Q6ZS02 220 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 HOMEZQ8IX15 550 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 C3orf56Q8N813 242 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 PDPRQ8NCN5 879 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 STEAP2Q8NFT2 490 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 OR7G1Q8NGA0 311 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 OR6K3Q8NGY3 331 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 FAM168AQ92567 244 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 ADIPOR1Q96A54 375 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 MTBPQ96DY7 904 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 SORBS1Q9BX66 1292 aaKnown RBP9.94□□□□□ -0.82
VPS53-207ENST00000570510 ADAM19Q9H013 955 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 OR51B5Q9H339 312 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 MANSC1Q9H8J5 431 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 PLSCR4Q9NRQ2 329 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 LYARQ9NX58 379 aaKnown RBP9.94□□□□□ -0.82
VPS53-207ENST00000570510 STOML1Q9UBI4 398 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 FBXL2Q9UKC9 423 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 IKZF3Q9UKT9 509 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 DTX4Q9Y2E6 619 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 MTO1Q9Y2Z2 717 aaKnown RBP9.94□□□□□ -0.82
VPS53-207ENST00000570510 ACOT9Q9Y305 439 aa9.94□□□□□ -0.82
VPS53-207ENST00000570510 MRPS18CQ9Y3D5 142 aaKnown RBP9.94□□□□□ -0.82
VPS53-207ENST00000570510 ESYT3A0FGR9 886 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 H3BML4 177 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 ACOX3O15254 700 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 CCNT2O60583 730 aaKnown RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 REM1O75628 298 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 S100BP04271 92 aaPredicted RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 TUBBP07437 444 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 INHBAP08476 426 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 LTA4HP09960 611 aaKnown RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 CCDC166P0CW27 439 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 CD1DP15813 335 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 IL32P24001 234 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 SERPINB1P30740 379 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 CASP2P42575 452 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 HSPA7P48741 367 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 GZMKP49863 264 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 SERPINB8P50452 374 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 HNRNPH2P55795 449 aaKnown RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 MRPS25P82663 173 aaKnown RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 HMGCS1Q01581 520 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 E2F2Q14209 437 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 RASA2Q15283 850 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 TRADDQ15628 312 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 TBCCQ15814 346 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 TSNAXIP1Q2TAA8 658 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 CTU2Q2VPK5 515 aaKnown RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 FBXO48Q5FWF7 155 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 DEPDC1Q5TB30 811 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 AGAP6Q5VW22 663 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 DESI1Q6ICB0 168 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 MED27Q6P2C8 311 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 KLC3Q6P597 504 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 MEX3DQ86XN8 651 aaKnown RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 GPSM1Q86YR5 675 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 RFLNBQ8N5W9 214 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 GBP7Q8N8V2 638 aaPredicted RBP9.93□□□□□ -0.82
VPS53-207ENST00000570510 OR10H5Q8NGA6 315 aa9.93□□□□□ -0.82
VPS53-207ENST00000570510 LILRB1Q8NHL6 650 aaPredicted RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms