RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ERCC6LQ2NKX8 1250 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 UNC50Q53HI1 259 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 VWA1Q6PCB0 445 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 SCIMPQ6UWF3 145 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 CLEC9AQ6UXN8 241 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 TAOK1Q7L7X3 1001 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 SLC44A2Q8IWA5 706 aaPredicted RBP15.25■□□□□ 0.03
CLN3-211ENST00000564091 UBQLNLQ8IYU4 475 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 CNEP1R1Q8N9A8 125 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 OR4K17Q8NGC6 315 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 DCAKDQ8WVC6 231 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 ANP32BQ92688 251 aaKnown RBP15.25■□□□□ 0.03
CLN3-211ENST00000564091 STARD4Q96DR4 205 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 APIPQ96GX9 242 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 WFIKKN1Q96NZ8 548 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 KLHL28Q9NXS3 571 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 MRPS18CQ9Y3D5 142 aaKnown RBP15.25■□□□□ 0.03
CLN3-211ENST00000564091 ARHGAP21Q5T5U3 1957 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 GNG14A0A1W2PPG7 69 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 H0YC42 278 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 MSTNO14793 375 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 SIAH2O43255 324 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 CTIFO43310 598 aaKnown RBP15.24■□□□□ 0.03
CLN3-211ENST00000564091 SCO2O43819 266 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 KRT6AP02538 564 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 KRT6BP04259 564 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 HSD3B1P14060 373 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 HSD3B2P26439 372 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 KRT6CP48668 564 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 HTR6P50406 440 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 TPD52P55327 224 aaPredicted RBP15.24■□□□□ 0.03
CLN3-211ENST00000564091 CLDN15P56746 228 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 EEF1A1P68104 462 aaKnown RBP15.24■□□□□ 0.03
CLN3-211ENST00000564091 BCL2A1Q16548 175 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 EEF1A1P5Q5VTE0 462 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 SHEQ5VZ18 495 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 ZNF474Q6S9Z5 364 aaPredicted RBP15.24■□□□□ 0.03
CLN3-211ENST00000564091 CHMP1BQ7LBR1 199 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 BTLAQ7Z6A9 289 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 OR7G2Q8NG99 324 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 OR5M1Q8NGP8 315 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 METTL6Q8TCB7 284 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 C16orf78Q8WTQ4 265 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 RNF138Q8WVD3 245 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 FIG4Q92562 907 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 ERP27Q96DN0 273 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 MTBPQ96DY7 904 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 FAM111AQ96PZ2 611 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 ACPTQ9BZG2 426 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 OPN3Q9H1Y3 402 aaPredicted RBP15.24■□□□□ 0.03
CLN3-211ENST00000564091 DSN1Q9H410 356 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 ZNF395Q9H8N7 513 aaPredicted RBP15.24■□□□□ 0.03
CLN3-211ENST00000564091 SLC35C2Q9NQQ7 365 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 OR10H1Q9Y4A9 318 aa15.24■□□□□ 0.03
CLN3-211ENST00000564091 SLC22A20A6NK97 555 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 DEFB108AA8MXU0 73 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 ULK1O75385 1050 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 PNLIPRP2P54317 469 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 DSCR4P56555 118 aaPredicted RBP15.23■□□□□ 0.03
CLN3-211ENST00000564091 BTKQ06187 659 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 CSTF3Q12996 717 aaKnown RBP15.23■□□□□ 0.03
CLN3-211ENST00000564091 RASA2Q15283 850 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 PRSS53Q2L4Q9 553 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 Q5PR19 223 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 SH2D4BQ5SQS7 431 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 ZNF678Q5SXM1 525 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 GPRIN3Q6ZVF9 776 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 P3H2Q8IVL5 708 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 IFT81Q8WYA0 676 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 ZNF592Q92610 1267 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 TMEM237Q96Q45 408 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 EBPLQ9BY08 206 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 GIMAP4Q9NUV9 329 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 FLRT3Q9NZU0 649 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 MED11Q9P086 117 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 SENP1Q9P0U3 644 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 PPP4R1LQ9P1A2 415 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 DMGDHQ9UI17 866 aaKnown RBP15.23■□□□□ 0.03
CLN3-211ENST00000564091 ZNF180Q9UJW8 692 aa15.23■□□□□ 0.03
CLN3-211ENST00000564091 FN1P02751 2386 aaKnown RBP15.22■□□□□ 0.03
CLN3-211ENST00000564091 ARHGEF9O43307 516 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 DLX3O60479 287 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 PLOD3O60568 738 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 PEPDP12955 493 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 HK1P19367 917 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 HMOX2P30519 316 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 EVI2BP34910 448 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 KIR2DL2P43627 348 aaPredicted RBP15.22■□□□□ 0.03
CLN3-211ENST00000564091 SUCLG1P53597 346 aaKnown RBP15.22■□□□□ 0.03
CLN3-211ENST00000564091 SIRPAP78324 504 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 PSG6Q00889 435 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 CKAP4Q07065 602 aaKnown RBP15.22■□□□□ 0.03
CLN3-211ENST00000564091 ACSM2AQ08AH3 577 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 ZNF155Q12901 538 aaPredicted RBP15.22■□□□□ 0.03
CLN3-211ENST00000564091 STX5Q13190 355 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 HEPACAMQ14CZ8 416 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 RAET1LQ5VY80 246 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 ACSM2BQ68CK6 577 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 SAMD14Q8IZD0 417 aaPredicted RBP15.22■□□□□ 0.03
CLN3-211ENST00000564091 FAM9CQ8IZT9 166 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms