RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SLC22A8Q8TCC7 542 aa9□□□□□ -0.97
CLK3-208ENST00000562626 ZFP90Q8TF47 636 aa9□□□□□ -0.97
CLK3-208ENST00000562626 SLC9A6Q92581 669 aa9□□□□□ -0.97
CLK3-208ENST00000562626 RAB8BQ92930 207 aa9□□□□□ -0.97
CLK3-208ENST00000562626 PNPLA2Q96AD5 504 aa9□□□□□ -0.97
CLK3-208ENST00000562626 NTNG2Q96CW9 530 aa9□□□□□ -0.97
CLK3-208ENST00000562626 NEURL3Q96EH8 262 aa9□□□□□ -0.97
CLK3-208ENST00000562626 HSPBAP1Q96EW2 488 aa9□□□□□ -0.97
CLK3-208ENST00000562626 RMND5BQ96G75 393 aaPredicted RBP9□□□□□ -0.97
CLK3-208ENST00000562626 OR7D2Q96RA2 312 aa9□□□□□ -0.97
CLK3-208ENST00000562626 CCT8L2Q96SF2 557 aa9□□□□□ -0.97
CLK3-208ENST00000562626 RTN4RQ9BZR6 473 aa9□□□□□ -0.97
CLK3-208ENST00000562626 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9□□□□□ -0.97
CLK3-208ENST00000562626 C3orf14Q9HBI5 128 aa9□□□□□ -0.97
CLK3-208ENST00000562626 NEUROD4Q9HD90 331 aa9□□□□□ -0.97
CLK3-208ENST00000562626 VAPAQ9P0L0 249 aa9□□□□□ -0.97
CLK3-208ENST00000562626 CNOT11Q9UKZ1 510 aaKnown RBP9□□□□□ -0.97
CLK3-208ENST00000562626 TRIM33Q9UPN9 1127 aa9□□□□□ -0.97
CLK3-208ENST00000562626 B3GNT3Q9Y2A9 372 aa9□□□□□ -0.97
CLK3-208ENST00000562626 PCDHB14Q9Y5E9 798 aa9□□□□□ -0.97
CLK3-208ENST00000562626 NBASA2RRP1 2371 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 HECTD1Q9ULT8 2610 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 NPIPA5A0A0B4J1W7 369 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 A0A1W2PP18 115 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 C2orf72A6NCS6 295 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 A8MVJ9 347 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 NPIPA7E9PJI5 369 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 FXYD1O00168 92 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 RFXANKO14593 260 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 NME2P1O60361 137 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 PPM1BO75688 479 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 SLC25A12O75746 678 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 UNC5CO95185 931 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 SP1P08047 785 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 NPIPA8P0DM63 369 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 CYP4B1P13584 511 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 NME2P22392 152 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 PIGAP37287 484 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 DNASE1L1P49184 302 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 RNF144AP50876 292 aaPredicted RBP8.99□□□□□ -0.97
CLK3-208ENST00000562626 MLLT10P55197 1068 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 MRPS22P82650 360 aaKnown RBP8.99□□□□□ -0.97
CLK3-208ENST00000562626 PRR5P85299 388 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 PLCXD2Q0VAA5 305 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 KLRB1Q12918 225 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 MAPKAPK3Q16644 382 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 C6orf10Q5SRN2 563 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.99□□□□□ -0.97
CLK3-208ENST00000562626 LRIF1Q5T3J3 769 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 CDC73Q6P1J9 531 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 TNFAIP8L2Q6P589 184 aaPredicted RBP8.99□□□□□ -0.97
CLK3-208ENST00000562626 FIGNL1Q6PIW4 674 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 OPN5Q6U736 354 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 MSANTD1Q6ZTZ1 278 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 ZNF605Q86T29 641 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 SNX32Q86XE0 403 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 RNF130Q86XS8 419 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 SULF2Q8IWU5 870 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 SLC15A4Q8N697 577 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 CDRT4Q8N9R6 151 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 LSM14AQ8ND56 463 aaKnown RBP8.99□□□□□ -0.97
CLK3-208ENST00000562626 PSD4Q8NDX1 1056 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 FAM13CQ8NE31 585 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 FAM110BQ8TC76 370 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 GPR151Q8TDV0 419 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 RNF138Q8WVD3 245 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 JADE3Q92613 823 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 SLC35G5Q96KT7 338 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 PHF12Q96QT6 1004 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 ADOQ96SZ5 270 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 SLC39A3Q9BRY0 314 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 ACTRT3Q9BYD9 372 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 NSRP1Q9H0G5 558 aaKnown RBP8.99□□□□□ -0.97
CLK3-208ENST00000562626 OR51I1Q9H343 314 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 HPF1Q9NWY4 346 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 CBLCQ9ULV8 474 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 VPS4AQ9UN37 437 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 CFL2Q9Y281 166 aa8.99□□□□□ -0.97
CLK3-208ENST00000562626 PHF3Q92576 2039 aaKnown RBP8.98□□□□□ -0.97
CLK3-208ENST00000562626 A0A096LPI6 279 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 TRAV17A0A0B4J275 112 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 CENPVL1A0A0U1RR11 272 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 LOC100653049A0A140TA62 436 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 HMGN4O00479 90 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 ACOX3O15254 700 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 ZNHIT1O43257 154 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 ICOSLGO75144 302 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 REM1O75628 298 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 KRT34O76011 436 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 KCNK2O95069 426 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 IL33O95760 270 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 SNRPB2P08579 225 aaKnown RBP8.98□□□□□ -0.97
CLK3-208ENST00000562626 NUDT7P0C024 238 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 ZCCHC18P0CG32 403 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 OR12D1P0DN82 309 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 SFTPCP11686 197 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 DDX5P17844 614 aaKnown RBP8.98□□□□□ -0.97
CLK3-208ENST00000562626 MATN1P21941 496 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 RFX3P48380 749 aa8.98□□□□□ -0.97
CLK3-208ENST00000562626 GAS1P54826 345 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms