RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 INTS1Q8N201 2190 aaKnown RBP14.3□□□□□ -0.12
VPS39-203ENST00000561797 NBPF19A0A087WUL8 3843 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 DOCK7Q96N67 2140 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 SNPHO15079 494 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 ITM2AO43736 263 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 HSPA4LO95757 839 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 GABRA1P14867 456 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 EFNA1P20827 205 aaPredicted RBP14.29□□□□□ -0.12
VPS39-203ENST00000561797 CHRNB4P30926 498 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 ASMTP46597 345 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 MANFP55145 182 aaKnown RBP14.29□□□□□ -0.12
VPS39-203ENST00000561797 CRYZQ08257 329 aaKnown RBP14.29□□□□□ -0.12
VPS39-203ENST00000561797 EFR3AQ14156 821 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 CHI3L2Q15782 390 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 CES4AQ5XG92 561 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 MCEMP1Q8IX19 187 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 OR2L13Q8N349 312 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 FAM83FQ8NEG4 500 aaPredicted RBP14.29□□□□□ -0.12
VPS39-203ENST00000561797 OR6Y1Q8NGX8 325 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 ZFP28Q8NHY6 868 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 TIMP4Q99727 224 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 C1orf50Q9BV19 199 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 ZNF395Q9H8N7 513 aaPredicted RBP14.29□□□□□ -0.12
VPS39-203ENST00000561797 EQTNQ9NQ60 294 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 CENPEQ02224 2701 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 CELSR2Q9HCU4 2923 aa14.29□□□□□ -0.12
VPS39-203ENST00000561797 TMEM114B3SHH9 223 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 TBX19O60806 448 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 TUBBP07437 444 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 HOXD4P09016 255 aaPredicted RBP14.28□□□□□ -0.12
VPS39-203ENST00000561797 CYP4B1P13584 511 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 BMP7P18075 431 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 MAPK1P28482 360 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 RFX3P48380 749 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 PRKAG1P54619 331 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 PSPHP78330 225 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 GAB1Q13480 694 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 ZNHIT3Q15649 155 aaPredicted RBP14.28□□□□□ -0.12
VPS39-203ENST00000561797 ATP6AP1LQ52LC2 224 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 XKR7Q5GH72 579 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 OR5M10Q6IEU7 315 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 SZRD1Q7Z422 152 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 ULK2Q8IYT8 1036 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 WDSUB1Q8N9V3 476 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 LILRB4Q8NHJ6 448 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 SSU72Q9NP77 194 aaKnown RBP14.28□□□□□ -0.12
VPS39-203ENST00000561797 CBLCQ9ULV8 474 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 CAMK2AQ9UQM7 478 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 WIF1Q9Y5W5 379 aa14.28□□□□□ -0.12
VPS39-203ENST00000561797 A0A0G2JNJ9 132 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 TM9SF1O15321 606 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 SCO2O43819 266 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 CBR3O75828 277 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 PSMG1O95456 288 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 MYZAPP0CAP1 466 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 PRPS2P11908 318 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 GABRA3P34903 492 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 HPCAL1P37235 193 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 ADH7P40394 386 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 ZFP36L2P47974 494 aaKnown RBP14.27□□□□□ -0.13
VPS39-203ENST00000561797 MRPS22P82650 360 aaKnown RBP14.27□□□□□ -0.13
VPS39-203ENST00000561797 PDE7AQ13946 482 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 DECR1Q16698 335 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 CYP27C1Q4G0S4 372 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 C6orf136Q5SQH8 315 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 IL23RQ5VWK5 629 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 VASNQ6EMK4 673 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 R3HCC1LQ7Z5L2 792 aaKnown RBP14.27□□□□□ -0.13
VPS39-203ENST00000561797 PLCZ1Q86YW0 608 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 FNDC5Q8NAU1 212 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 OR7A2PQ8NGA2 310 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 OR14L1PQ8NHC6 308 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 ABTB1Q969K4 478 aaPredicted RBP14.27□□□□□ -0.13
VPS39-203ENST00000561797 TUBGCP3Q96CW5 907 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 MTERF3Q96E29 417 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 ZBED6CLQ96FA7 236 aaPredicted RBP14.27□□□□□ -0.13
VPS39-203ENST00000561797 ZNF764Q96H86 408 aaPredicted RBP14.27□□□□□ -0.13
VPS39-203ENST00000561797 PPP1R36Q96LQ0 422 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 UGT2B28Q9BY64 529 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 Q9N2J8 555 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 KCNJ16Q9NPI9 418 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 FLRT3Q9NZU0 649 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 Q9UFV3 132 aa14.27□□□□□ -0.13
VPS39-203ENST00000561797 MED12LQ86YW9 2145 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 ITPR2Q14571 2701 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 GXYLT2A0PJZ3 443 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 C17orf51A8MQB3 221 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 AHRRA9YTQ3 701 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 KDM4EB2RXH2 506 aaPredicted RBP14.26□□□□□ -0.13
VPS39-203ENST00000561797 SCAMP2O15127 329 aaKnown RBP14.26□□□□□ -0.13
VPS39-203ENST00000561797 BIRC5O15392 142 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 SERPINE1P05121 402 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 BGNP21810 368 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 TCEA1P23193 301 aaKnown RBP14.26□□□□□ -0.13
VPS39-203ENST00000561797 GRK2P25098 689 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 FRKP42685 505 aaPredicted RBP14.26□□□□□ -0.13
VPS39-203ENST00000561797 WNT3P56703 355 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 ABCE1P61221 599 aaKnown RBP14.26□□□□□ -0.13
VPS39-203ENST00000561797 MPP2Q14168 576 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 PTGR1Q14914 329 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms