RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 OR4Q3Q8NH05 313 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 NEIL3Q8TAT5 605 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 RAET1EQ8TD07 263 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 UBE2E3Q969T4 207 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 PPP1R16AQ96I34 528 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 MAP6Q96JE9 813 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 MS4A8Q9BY19 250 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 GLIPR2Q9H4G4 154 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 DIABLOQ9NR28 239 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 HCFC1R1Q9NWW0 138 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 TRPC4Q9UBN4 977 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 NTNG1Q9Y2I2 539 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 CHST2Q9Y4C5 530 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 HCFC2Q9Y5Z7 792 aa5.09□□□□□ -1.59
LIMA1-212ENST00000552491 SIRT4Q9Y6E7 314 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-212ENST00000552491 CHD7Q9P2D1 2997 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 GLOD5A6NK44 160 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 INMT-MINDY4F8WBC2 141 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 FABP7O15540 132 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 TGM5O43548 720 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 TBX19O60806 448 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 SLC43A1O75387 559 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 POP7O75817 140 aaKnown RBP5.09□□□□□ -1.6
LIMA1-212ENST00000552491 PAPLNO95428 1278 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 SYPP08247 313 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 NR2F1P10589 423 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 ACP5P13686 325 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 TYRP14679 529 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 ENPP1P22413 925 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 PKLRP30613 574 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 BTCP35070 178 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 TRIM23P36406 574 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 BUD31P41223 144 aaPredicted RBP5.09□□□□□ -1.6
LIMA1-212ENST00000552491 RECQLP46063 649 aaPredicted RBP5.09□□□□□ -1.6
LIMA1-212ENST00000552491 SMSP52788 366 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 PRKAG1P54619 331 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 UBE3AQ05086 875 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 GPR176Q14439 515 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 SF3A2Q15428 464 aaKnown RBP5.09□□□□□ -1.6
LIMA1-212ENST00000552491 FCN2Q15485 313 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 FAM27D1Q5T7N8 215 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 AADACL4Q5VUY2 407 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 FAM205BPQ63HN1 556 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 KIAA1161Q6NSJ0 714 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 SLC36A4Q6YBV0 504 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 C11orf96Q7Z7L8 435 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 AMIGO1Q86WK6 493 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 TIGD4Q8IY51 512 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 SLC37A3Q8NCC5 494 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 SUN5Q8TC36 379 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 SETD7Q8WTS6 366 aaKnown RBP5.09□□□□□ -1.6
LIMA1-212ENST00000552491 SPRYD4Q8WW59 207 aaPredicted RBP5.09□□□□□ -1.6
LIMA1-212ENST00000552491 HSD17B8Q92506 261 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 TCEAL4Q96EI5 215 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 DTD2Q96FN9 168 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 C16orf58Q96GQ5 468 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 FAM46AQ96IP4 442 aaKnown RBP5.09□□□□□ -1.6
LIMA1-212ENST00000552491 PRRC1Q96M27 445 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 TIMP4Q99727 224 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 COQ7Q99807 217 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 MKRN2Q9H000 416 aaKnown RBP5.09□□□□□ -1.6
LIMA1-212ENST00000552491 ISG20L2Q9H9L3 353 aaKnown RBP5.09□□□□□ -1.6
LIMA1-212ENST00000552491 NEUROD4Q9HD90 331 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 SEMA4GQ9NTN9 838 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 STMN3Q9NZ72 180 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 AHSPQ9NZD4 102 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 MAT2BQ9NZL9 334 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 P2RX2Q9UBL9 471 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 TAC3Q9UHF0 121 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 CLCA2Q9UQC9 943 aa5.09□□□□□ -1.6
LIMA1-212ENST00000552491 EXOSC1Q9Y3B2 195 aaKnown RBP5.09□□□□□ -1.6
LIMA1-212ENST00000552491 MDC1Q14676 2089 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 A0A0A6YYJ9 748 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 A0A1W2PQ72 361 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ZC3H12DA2A288 527 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 FAM170BA6NMN3 283 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 C4orf51C9J302 202 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 H7BY64 318 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SGK494L7N484 410 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SOCS6O14544 535 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 KIAA0355O15063 1070 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 PI15O43692 258 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 CHP2O43745 196 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 ORC5O43913 435 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 LCMT2O60294 686 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 SCO1O75880 301 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 THY1P04216 161 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 EIF4EP06730 217 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 GNSP15586 552 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 GSTM3P21266 225 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 TBXA2RP21731 343 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 CFL1P23528 166 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 TRHRP34981 398 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 CA8P35219 290 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 OMPP47874 163 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 CDH11P55287 796 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 CSTF1Q05048 431 aaKnown RBP5.08□□□□□ -1.6
LIMA1-212ENST00000552491 MESP2Q0VG99 397 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 MAB21L1Q13394 359 aa5.08□□□□□ -1.6
LIMA1-212ENST00000552491 CCDC85BQ15834 202 aaPredicted RBP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms