RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 POLE3Q9NRF9 147 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 GPATCH2Q9NW75 528 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 ANAPC2Q9UJX6 822 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 C15orf38-AP3S2A0A0A6YYH1 394 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 ANKRD33BA6NCL7 494 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 EFNA1P20827 205 aaPredicted RBP16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 GABRA3P34903 492 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 PIGAP37287 484 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 CD96P40200 585 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 POU6F2P78424 691 aaPredicted RBP16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 DUSP8Q13202 625 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 UBAP2LQ14157 1087 aaKnown RBP16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 ZNF169Q14929 603 aaPredicted RBP16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 OR1C1Q15619 314 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 ZNF791Q3KP31 576 aaPredicted RBP16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 SLC22A10Q63ZE4 541 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 FCRLBQ6BAA4 426 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 ARPINQ7Z6K5 226 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 METTL25Q8N6Q8 603 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 ZFP90Q8TF47 636 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 DIO2Q92813 273 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 COL21A1Q96P44 957 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 NPAS2Q99743 824 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 NDE1Q9NXR1 346 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 CALML5Q9NZT1 146 aa16.16■□□□□ 0.18
CLSTN3-210ENST00000540931 C9JVG2 144 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 REM1O75628 298 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 SLC25A12O75746 678 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 NADKO95544 446 aaPredicted RBP16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 IL33O95760 270 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 P04436 131 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 ATP6V1C1P21283 382 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 SOX3P41225 446 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 SF3A3Q12874 501 aaKnown RBP eCLIP16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 NFYCQ13952 458 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 TRMT5Q32P41 509 aaKnown RBP16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 EXOSC6Q5RKV6 272 aaKnown RBP16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 SLC25A25Q6KCM7 469 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 SLC2A7Q6PXP3 512 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 IL20RBQ6UXL0 311 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 GK5Q6ZS86 529 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 DHDDSQ86SQ9 333 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 CPAMD8Q8IZJ3 1885 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 EXD3Q8N9H8 876 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 POGLUT1Q8NBL1 392 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 OR52N2Q8NGI0 321 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 DOK4Q8TEW6 326 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 PAQR8Q8TEZ7 354 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 NUDT8Q8WV74 236 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 OMA1Q96E52 524 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 PAIP1Q9H074 479 aaKnown RBP16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 SACM1LQ9NTJ5 587 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 ABCG2Q9UNQ0 655 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 DTX4Q9Y2E6 619 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 PCDHB14Q9Y5E9 798 aa16.15■□□□□ 0.18
CLSTN3-210ENST00000540931 CLIC1O00299 241 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 SNX4O95219 450 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 SP1P08047 785 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 COX4I1P13073 169 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 PTGER1P34995 402 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 HPCAP84074 193 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 GAB1Q13480 694 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 ZNF766Q5HY98 468 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 C16orf62Q7Z3J2 963 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 SNX32Q86XE0 403 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 ZNF527Q8NB42 609 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 SLC16A11Q8NCK7 471 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 MDS2Q8NDY4 140 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 OR5AK3PQ8NH89 298 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 HOPXQ9BPY8 73 aaPredicted RBP16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 INPP5KQ9BT40 448 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 SPATA9Q9BWV2 254 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 TRIM4Q9C037 500 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 ANKRA2Q9H9E1 313 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 SDHAF3Q9NRP4 125 aa16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.14■□□□□ 0.17
CLSTN3-210ENST00000540931 LOC100653049A0A140TA62 436 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 PYCARD-AS1I3L0S3 204 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 MRASO14807 208 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 KRT34O76011 436 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 OR6B1O95007 311 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 NGFRP08138 427 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 MAN2A2P49641 1150 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 CORO7P57737 925 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 ART3Q13508 389 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 KRT72Q14CN4 511 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 PAGE3Q5JUK9 113 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 AP1ARQ63HQ0 302 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 SLC30A6Q6NXT4 461 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 HACD2Q6Y1H2 254 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 SLC30A8Q8IWU4 369 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 FBXW8Q8N3Y1 598 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 PSD4Q8NDX1 1056 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 FAM13CQ8NE31 585 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 CHDHQ8NE62 594 aaPredicted RBP16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 OR8J3Q8NGG0 315 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 FAM110BQ8TC76 370 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 TMBIM1Q969X1 311 aa16.13■□□□□ 0.17
CLSTN3-210ENST00000540931 SCMH1Q96GD3 660 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms