RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	TEAD3	Q99594	435 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	PIMREG	Q9BSJ6	248 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	SORBS1	Q9BX66	1292 aa	Known RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	DGCR6L	Q9BY27	220 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	SLC29A3	Q9BZD2	475 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	OR10A4	Q9H209	315 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	FN3K	Q9H479	309 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	RIBC2	Q9H4K1	309 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	BRF2	Q9HAW0	419 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	FOLH1B	Q9HBA9	442 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	SPAG4	Q9NPE6	437 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	NRBP2	Q9NSY0	501 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	TMEM45A	Q9NWC5	275 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	TEX10	Q9NXF1	929 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	PLEK2	Q9NYT0	353 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF224	Q9NZL3	707 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	CD274	Q9NZQ7	290 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	METTL1	Q9UBP6	276 aa	Known RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	PHF11	Q9UIL8	331 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	RIMS3	Q9UJD0	308 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	NCKAP1	Q9Y2A7	1128 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	MRPS2	Q9Y399	296 aa	Known RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	SRPRB	Q9Y5M8	271 aa	Known RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	ALG5	Q9Y673	324 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110		U3KQ87	197 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	SLIT3	O75094	1523 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	IQGAP3	Q86VI3	1631 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	NEXMIF	Q5QGS0	1516 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	TRBV5-3	A0A0A0MS03	114 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110		A0A0A6YYH2	397 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	KIR2DS5	A0A0G2JLQ3	304 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	PRSS51	A0A1B0GVH4	220 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110		A6NJ64	397 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110		A8MU76	341 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	BLOC1S5-TXNDC5	H3BN57	136 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	MKRN2OS	H3BPM6	223 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	KIR2DS3	K7RE56	304 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SEPT4	O43236	478 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	FADS1	O60427	444 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	TPST1	O60507	370 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	STARD3NL	O95772	234 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	IFNA6	P05013	189 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SERPING1	P05155	500 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	TPO	P07202	933 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	FAM86B2	P0C5J1	330 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF806	P0C7X5	589 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	OR8G3P	P0DMU2	310 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	HNF1A	P20823	631 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	S1PR1	P21453	382 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	PAICS	P22234	425 aa	Known RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	GABRR1	P24046	479 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	HOXD9	P28356	352 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	CD1B	P29016	333 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	CALCR	P30988	508 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	CORO1A	P31146	461 aa	Known RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	MAPK4	P31152	587 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	LIMK2	P53671	638 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	OAZ1	P54368	228 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	ARL4C	P56559	192 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	PTEN	P60484	403 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	GABARAPL2	P60520	117 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	PSPH	P78330	225 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	ARHGAP8	P85298	464 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SHC2	P98077	582 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	HSF2	Q03933	536 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SPP2	Q13103	211 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	BTN1A1	Q13410	526 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	HFE	Q30201	348 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SLC36A3	Q495N2	470 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	PAN3	Q58A45	887 aa	Known RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	OR2B11	Q5JQS5	317 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	ZBTB49	Q6ZSB9	765 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SLC24A5	Q71RS6	500 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	ADGRD2	Q7Z7M1	963 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	DHFR2	Q86XF0	187 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SCN4B	Q8IWT1	228 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	GUF1	Q8N442	669 aa	Known RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	ATPAF2	Q8N5M1	289 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	C1orf52	Q8N6N3	182 aa	Known RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	PQLC3	Q8N755	202 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SYT14	Q8NB59	555 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	OR2V1	Q8NHB1	315 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	STOML3	Q8TAV4	291 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	CD300LF	Q8TDQ1	290 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	GLYATL2	Q8WU03	294 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SLC35F5	Q8WV83	523 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	ACOT11	Q8WXI4	607 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	NR4A3	Q92570	626 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	APBB2	Q92870	758 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SLCO2A1	Q92959	643 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	C14orf144	Q96I85	54 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	FAM210B	Q96KR6	192 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	APOLD1	Q96LR9	279 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	GCNA	Q96QF7	691 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	ERGIC2	Q96RQ1	377 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	INTS14	Q96SY0	518 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	PFDN5	Q99471	154 aa		5.25	□□□□□ -1.57

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