RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SH3GLB1Q9Y371 365 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 SPAARA0A1B0GVQ0 90 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 PMS2P1A4D2B8 440 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 DKK1O94907 266 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 FTH1P19P0C7X4 201 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 ITGA2P17301 1181 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 TNFRSF1BP20333 461 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 TRHRP34981 398 aaPredicted RBP19.51■□□□□ 0.71
VPS28-208ENST00000527797 OR1E2P47887 323 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 TMEM164Q5U3C3 297 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 ZNF517Q6ZMY9 492 aaPredicted RBP19.51■□□□□ 0.71
VPS28-208ENST00000527797 ZBTB49Q6ZSB9 765 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 ZNF321PQ8N8H1 164 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 GPR32P1Q8NGA4 272 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 RMND5BQ96G75 393 aaPredicted RBP19.51■□□□□ 0.71
VPS28-208ENST00000527797 ZNF354BQ96LW1 612 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 C9orf16Q9BUW7 83 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 NUDT9Q9BW91 350 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 ITPAQ9BY32 194 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 COPS7AQ9UBW8 275 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 CNOT11Q9UKZ1 510 aaKnown RBP19.51■□□□□ 0.71
VPS28-208ENST00000527797 OAZ3Q9UMX2 235 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 PCDHGA3Q9Y5H0 932 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 TEX51A0A1B0GUA7 166 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 BRINP1O60477 761 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 ZIC2O95409 532 aaPredicted RBP19.51■□□□□ 0.71
VPS28-208ENST00000527797 PABPC4LP0CB38 370 aaKnown RBP19.51■□□□□ 0.71
VPS28-208ENST00000527797 KCNC4Q03721 635 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 ZNF311Q5JNZ3 666 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 OR2T5Q6IEZ7 315 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 FIGNL1Q6PIW4 674 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 FAM198BQ6UWH4 519 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 C6orf15Q6UXA7 325 aaPredicted RBP19.51■□□□□ 0.71
VPS28-208ENST00000527797 KBTBD2Q8IY47 623 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 PEX5LQ8IYB4 626 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 OR2T29Q8NH02 315 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 OR52P1PQ8NH57 321 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 DNAJC9Q8WXX5 260 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 PMM1Q92871 262 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 TMBIM1Q969X1 311 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 PINK1Q9BXM7 581 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 SAP130Q9H0E3 1048 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 QRSL1Q9H0R6 528 aaKnown RBP19.51■□□□□ 0.71
VPS28-208ENST00000527797 COQ10BQ9H8M1 238 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 THSD1Q9NS62 852 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 C19orf25Q9UFG5 118 aaPredicted RBP19.51■□□□□ 0.71
VPS28-208ENST00000527797 IFT52Q9Y366 437 aa19.51■□□□□ 0.71
VPS28-208ENST00000527797 KCNK2O95069 426 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 IFNW1P05000 195 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 CD63P08962 238 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 CCNYL3P0C7X3 344 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 CT45A8P0DMV1 189 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 CT45A9P0DMV2 189 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 ZNF23P17027 643 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 CSRP1P21291 193 aaKnown RBP19.5■□□□□ 0.71
VPS28-208ENST00000527797 NCF4Q15080 339 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 GPR68Q15743 365 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 IQCCQ4KMZ1 466 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 CT45A2Q5DJT8 189 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 NPSR1Q6W5P4 371 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 HMGN2P46Q86SG4 172 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 ZNF619Q8N2I2 560 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 OR1N1Q8NGS0 311 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 ZG16BQ96DA0 208 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 BTBD9Q96Q07 612 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 ZNF347Q96SE7 839 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 ZNF184Q99676 751 aaPredicted RBP19.5■□□□□ 0.71
VPS28-208ENST00000527797 RSPO3Q9BXY4 272 aaPredicted RBP19.5■□□□□ 0.71
VPS28-208ENST00000527797 PADI1Q9ULC6 663 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 GPR55Q9Y2T6 319 aaPredicted RBP19.5■□□□□ 0.71
VPS28-208ENST00000527797 OR10H1Q9Y4A9 318 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 DMDP11532 3685 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 FRYLO94915 3013 aa19.5■□□□□ 0.71
VPS28-208ENST00000527797 FER1L5A0AVI2 2057 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 IGHV3-20A0A0C4DH32 117 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 A0A1W2PNU3 283 aaPredicted RBP19.49■□□□□ 0.71
VPS28-208ENST00000527797 PRAMEF25A6NGN4 478 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 GUSBP08236 651 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 PPICP45877 212 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 PUM1Q14671 1186 aaKnown RBP eCLIP19.49■□□□□ 0.71
VPS28-208ENST00000527797 C3orf38Q5JPI3 329 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 TMEM205Q6UW68 189 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 CPEB2Q7Z5Q1 589 aaKnown RBP19.49■□□□□ 0.71
VPS28-208ENST00000527797 GALNT4Q8N4A0 578 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 OR4N2Q8NGD1 307 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 APOBEC4Q8WW27 367 aaKnown RBP19.49■□□□□ 0.71
VPS28-208ENST00000527797 FBXO34Q9NWN3 711 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 NDUFAF4Q9P032 175 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 CBLCQ9ULV8 474 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 ZNF232Q9UNY5 417 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 FAM32AQ9Y421 112 aaKnown RBP19.49■□□□□ 0.71
VPS28-208ENST00000527797 LRRC42Q9Y546 428 aa19.49■□□□□ 0.71
VPS28-208ENST00000527797 SAGE2PA6NJ88 616 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 OR6C76A6NM76 312 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 C9orf172C9J069 976 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 DPM1O60762 260 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 E2F6O75461 281 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 DIRAS1O95057 198 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 DLGAP3O95886 979 aa19.48■□□□□ 0.71
VPS28-208ENST00000527797 ZNF26P17031 533 aaPredicted RBP19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms