RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PANX1Q96RD7 426 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 ADOQ96SZ5 270 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 TMEM120AQ9BXJ8 343 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 TRIM4Q9C037 500 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 GPATCH2Q9NW75 528 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 KLHL14Q9P2G3 628 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 CNOT11Q9UKZ1 510 aaKnown RBP13.11□□□□□ -0.31
NUP54-216ENST00000514901 VPS4AQ9UN37 437 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 NTNG1Q9Y2I2 539 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 EML6Q6ZMW3 1958 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 ZGRF1Q86YA3 2104 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 RNF103-CHMP3A0A140T963 221 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 CCDC154A6NI56 674 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 DUXAA6NLW8 204 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 C9JVG2 144 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 J3QKU1 62 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 ACOT7O00154 380 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 RFXANKO14593 260 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 UGT2B11O75310 529 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 IL33O95760 270 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 ZNF24P17028 368 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 LCN1P31025 176 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 CASP3P42574 277 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 TRPC1P48995 793 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 KCNK10P57789 538 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 GPR85P60893 370 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 TXNL4AP83876 142 aaKnown RBP13.1□□□□□ -0.31
NUP54-216ENST00000514901 LASP1Q14847 261 aaKnown RBP13.1□□□□□ -0.31
NUP54-216ENST00000514901 SLC30A6Q6NXT4 461 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 BLOC1S3Q6QNY0 202 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 C6orf120Q7Z4R8 191 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 PACS2Q86VP3 889 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 CPSF7Q8N684 471 aaKnown RBP13.1□□□□□ -0.31
NUP54-216ENST00000514901 SLC16A11Q8NCK7 471 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 OR4N2Q8NGD1 307 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 OR9I1Q8NGQ6 314 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 ADAMTS15Q8TE58 950 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 JADE3Q92613 823 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 C16orf58Q96GQ5 468 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 SLX1AQ9BQ83 275 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 DOHHQ9BU89 302 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 BTBD2Q9BX70 525 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 ANGPTL4Q9BY76 406 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 PIGUQ9H490 435 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 METTL7AQ9H8H3 244 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 IL1RL2Q9HB29 575 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 DEPPQ9NTK1 212 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 BOKQ9UMX3 212 aaPredicted RBP13.1□□□□□ -0.31
NUP54-216ENST00000514901 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.1□□□□□ -0.31
NUP54-216ENST00000514901 MYO18BQ8IUG5 2567 aa13.1□□□□□ -0.31
NUP54-216ENST00000514901 AGR2O95994 175 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 ZCCHC18P0CG32 403 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 ACP2P11117 423 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 MATN1P21941 496 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 CHI3L1P36222 383 aaPredicted RBP13.09□□□□□ -0.31
NUP54-216ENST00000514901 MAGEA8P43361 318 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 ZFP36L2P47974 494 aaKnown RBP13.09□□□□□ -0.31
NUP54-216ENST00000514901 PPIAP62937 165 aaKnown RBP13.09□□□□□ -0.31
NUP54-216ENST00000514901 KCNJ2P63252 427 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 PMP22Q01453 160 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 PLGLB1Q02325 96 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 RCAN2Q14206 197 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 IGFBP7Q16270 282 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 DUSP5Q16690 384 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 HYAL4Q2M3T9 481 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 AGKQ53H12 422 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 PRAMEF20Q5VT98 475 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 ZNF621Q6ZSS3 439 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 WDR53Q7Z5U6 358 aaPredicted RBP13.09□□□□□ -0.31
NUP54-216ENST00000514901 SLC22A16Q86VW1 577 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 FUNDC1Q8IVP5 155 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 COX18Q8N8Q8 333 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 ST6GALNAC3Q8NDV1 305 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 OR5AK3PQ8NH89 298 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 FAM110BQ8TC76 370 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 MIPOL1Q8TD10 442 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 TSPEARQ8WU66 669 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 NEURL3Q96EH8 262 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 YIPF4Q9BSR8 244 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 G6PC3Q9BUM1 346 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 HELZ2Q9BYK8 2649 aaKnown RBP13.09□□□□□ -0.31
NUP54-216ENST00000514901 PROK2Q9HC23 129 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 HHATLQ9HCP6 504 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 ZFP64Q9NPA5 681 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 CCDC167Q9P0B6 97 aa13.09□□□□□ -0.31
NUP54-216ENST00000514901 GXYLT2A0PJZ3 443 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 TFECO14948 347 aaPredicted RBP13.08□□□□□ -0.32
NUP54-216ENST00000514901 TRIM3O75382 744 aaPredicted RBP13.08□□□□□ -0.32
NUP54-216ENST00000514901 GLSO94925 669 aaPredicted RBP13.08□□□□□ -0.32
NUP54-216ENST00000514901 KRT75O95678 551 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 AK1P00568 194 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 DNASE1L1P49184 302 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 MAN2A2P49641 1150 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 CLK3P49761 638 aaKnown RBP13.08□□□□□ -0.32
NUP54-216ENST00000514901 ANXA11P50995 505 aaKnown RBP13.08□□□□□ -0.32
NUP54-216ENST00000514901 POU6F2P78424 691 aaPredicted RBP13.08□□□□□ -0.32
NUP54-216ENST00000514901 FOXO1Q12778 655 aa13.08□□□□□ -0.32
NUP54-216ENST00000514901 ELOAQ14241 798 aaKnown RBP13.08□□□□□ -0.32
NUP54-216ENST00000514901 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.08□□□□□ -0.32
NUP54-216ENST00000514901 TIGD2Q4W5G0 525 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms