RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PRMT9Q6P2P2 845 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 TMEM107Q6UX40 140 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 HIST3H2AQ7L7L0 130 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 NRARPQ7Z6K4 114 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 LHFPL4Q7Z7J7 247 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 PATL1Q86TB9 770 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 TRIM69Q86WT6 500 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 RBFAQ8N0V3 343 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 GABRG1Q8N1C3 465 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ARHGAP24Q8N264 748 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 FAM89BQ8N5H3 189 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 PCDH20Q8N6Y1 951 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 TMEM104Q8NE00 496 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 OR52N4Q8NGI2 321 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 OR6Q1Q8NGQ2 317 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 RAET1EQ8TD07 263 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC44A1Q8WWI5 657 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 DNASE2BQ8WZ79 361 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 DAZLQ92904 295 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ORAI1Q96D31 301 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ECHDC3Q96DC8 303 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ABHD8Q96I13 439 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 CPB2Q96IY4 423 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 B3GALT6Q96L58 329 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 TSSK3Q96PN8 268 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ACCSQ96QU6 501 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 CENPKQ9BS16 269 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 WRAP53Q9BUR4 548 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 C20orf24Q9BUV8 137 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ST6GALNAC5Q9BVH7 336 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 POLR3FQ9H1D9 316 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 VIPAS39Q9H9C1 493 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 CNGB3Q9NQW8 809 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 TMEM248Q9NWD8 314 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 NDE1Q9NXR1 346 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ANKRD10Q9NXR5 420 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 SPHK1Q9NYA1 384 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ABCD2Q9UBJ2 740 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 COPS7AQ9UBW8 275 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 CYB5R1Q9UHQ9 305 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 TINAGQ9UJW2 476 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 EIF3LQ9Y262 564 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 V9GYQ6 96 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 UTYO14607 1347 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 GRIN2DO15399 1336 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 CCDC171Q6TFL3 1326 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 NACADO15069 1562 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 A0A1B0GVT2 93 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 MTMR11A4FU01 709 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 GOLGA6L9A6NEM1 432 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 C3orf70A6NLC5 250 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 A8MUA0 341 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 ERVV-2B6SEH9 535 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 MCIDASD6RGH6 385 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 SGK494L7N484 410 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 EEF2KO00418 725 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 LIN7AO14910 233 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 MID1O15344 667 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 TIMM8AO60220 97 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 NME2P1O60361 137 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 TSPAN12O95859 305 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 CST1P01037 141 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 IGKV3-20P01619 116 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 SERPIND1P05546 499 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 GNAO1P09471 354 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 CPN1P15169 458 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 CD22P20273 847 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 ITGAXP20702 1163 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 ALDH3B2P48448 385 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 NUMBP49757 651 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 STK19P49842 368 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 ASCL1P50553 236 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 CCR8P51685 355 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 OR2B6P58173 313 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 ARF6P62330 175 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 ADARB1P78563 741 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 RPL36AP83881 106 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 MYBPC1Q00872 1141 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 CHRNB3Q05901 458 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF33BQ06732 778 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 KRT33BQ14525 404 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 RPE65Q16518 533 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 CAMK4Q16566 473 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 MICBQ29980 383 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 SOWAHAQ2M3V2 549 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 XKR6Q5GH73 641 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 LGSNQ5TDP6 509 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 SEL1L2Q5TEA6 688 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 KHDRBS2Q5VWX1 349 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 TMEM225Q6GV28 225 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 SPOPLQ6IQ16 392 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 RHBDD2Q6NTF9 364 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 HSDL2Q6YN16 418 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 IL17RELQ6ZVW7 336 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 PRSS45Q7RTY3 260 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 TMEM173Q86WV6 379 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 TDRPQ86YL5 185 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 ENTHD1Q8IYW4 607 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 CCDC185Q8N715 623 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 PRR26Q8N8Z3 221 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms