RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SSR4P51571 173 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 DEFB113Q30KQ7 82 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 C9orf40Q8IXQ3 194 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 GPALPP1Q8IXQ4 340 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 CYP4Z2PQ8N1L4 340 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 KRTCAP2Q8N6L1 136 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 OR7A2PQ8NGA2 310 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 OR5L2Q8NGL0 311 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 GOT1L1Q8NHS2 421 aaPredicted RBP10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 ZFP28Q8NHY6 868 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 NUBPLQ8TB37 319 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 FAM57AQ8TBR7 257 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 STON2Q8WXE9 905 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 CIDECQ96AQ7 238 aaPredicted RBP10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 ERP27Q96DN0 273 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 ZBED6CLQ96FA7 236 aaPredicted RBP10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 AMDHD1Q96NU7 426 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 PRPF18Q99633 342 aaKnown RBP10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 EBF4Q9BQW3 602 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 SIKE1Q9BRV8 207 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 OR10A5Q9H207 317 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 GLIPR2Q9H4G4 154 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 TCF7L2Q9NQB0 619 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 ACSS1Q9NUB1 689 aaPredicted RBP10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 ATAD3AQ9NVI7 634 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 HRH3Q9Y5N1 445 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 EML6Q6ZMW3 1958 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 MPDZO75970 2070 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 POLR3GO15318 223 aaPredicted RBP10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 PLOD3O60568 738 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 CBX7O95931 251 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 IFI6P09912 130 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 LAMP1P11279 417 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 IDO1P14902 403 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 CLNS1AP54105 237 aaKnown RBP10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 AQP5P55064 265 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 MRPS35P82673 323 aaKnown RBP10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 EXOSC7Q15024 291 aaKnown RBP10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 MLC1Q15049 377 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 EBPQ15125 230 aaKnown RBP10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 GSTA3Q16772 222 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 TRMT12Q53H54 448 aaKnown RBP10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 CPTPQ5TA50 214 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 SLC29A4Q7RTT9 530 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 ZNF551Q7Z340 670 aaPredicted RBP10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 CDC20BQ86Y33 519 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 CCDC71Q8IV32 467 aaPredicted RBP10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 SULF2Q8IWU5 870 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 NATD1Q8N6N6 113 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 ZNF615Q8N8J6 731 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 C16orf52Q8NHV5 167 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 KAT2AQ92830 837 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 TESCQ96BS2 214 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 COQ8BQ96D53 544 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 CCDC28BQ9BUN5 200 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 BHLHE41Q9C0J9 482 aaPredicted RBP10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 LIN28AQ9H9Z2 209 aaKnown RBP10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 NPHS2Q9NP85 383 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 TIMMDC1Q9NPL8 285 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 FGFR1OP2Q9NVK5 253 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 MYOTQ9UBF9 498 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 BCAP29Q9UHQ4 241 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 ADAM21Q9UKJ8 722 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 CFL2Q9Y281 166 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 L3MBTL1Q9Y468 752 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 GPR45Q9Y5Y3 372 aa10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 NUP214P35658 2090 aaPredicted RBP10.94□□□□□ -0.66
SQSTM1-206ENST00000466342 A0A087WV62 115 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 PLOD2O00469 737 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 UBDO15205 165 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 PEX1O43933 1283 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 BCAS2O75934 225 aaPredicted RBP10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 OR2J2O76002 312 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 RAF1P04049 648 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 VIMP08670 466 aaKnown RBP10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 ZNF24P17028 368 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 GPC1P35052 558 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 PTGS2P35354 604 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 MANFP55145 182 aaKnown RBP10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 HSPB3Q12988 150 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 DUSP8Q13202 625 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 DPY19L1Q2PZI1 675 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 PDCD4Q53EL6 469 aaKnown RBP10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 RNFT1Q5M7Z0 435 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 TMEM107Q6UX40 140 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 C16orf47Q6ZP98 133 aaPredicted RBP10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 MDGA2Q7Z553 956 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 CD163Q86VB7 1156 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 ZZZ3Q8IYH5 903 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 CPSF7Q8N684 471 aaKnown RBP10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 ZFP62Q8NB50 900 aaPredicted RBP10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 SIMC1Q8NDZ2 872 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 OR7G2Q8NG99 324 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 OR52R1Q8NGF1 315 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 OR8J2Q8NGG1 315 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 RFWD2Q8NHY2 731 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 THOC1Q96FV9 657 aaKnown RBP10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 MARK4Q96L34 752 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 GAL3ST4Q96RP7 486 aa10.93□□□□□ -0.66
SQSTM1-206ENST00000466342 DUSP26Q9BV47 211 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms