RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ATAD3BQ5T9A4 648 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 OR2G6Q5TZ20 316 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 PRAMEF8Q5VWM4 474 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 PRAMEF7Q5VXH5 474 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 SLC27A4Q6P1M0 643 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 SHFQ7M4L6 423 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 CCDC190Q86UF4 302 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 TMEFF1Q8IYR6 380 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 OR52P1PQ8NH57 321 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 FLVCR1-AS1Q8TAF5 88 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 TEX47Q8TBZ9 253 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 CDS1Q92903 461 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 TMEM203Q969S6 136 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 SIPA1Q96FS4 1042 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 BMFQ96LC9 184 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 CDCA3Q99618 268 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-217ENST00000466159 SDHCQ99643 169 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-217ENST00000466159 TPK1Q9H3S4 243 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 SP140LQ9H930 580 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 SNTG1Q9NSN8 517 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 ERVK13-1Q9NX77 482 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 KCMF1Q9P0J7 381 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 SEC14L4Q9UDX3 406 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 STUB1Q9UNE7 303 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 LIPT1Q9Y234 373 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 FANCMQ8IYD8 2048 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 AQP9O43315 295 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 KCNK2O95069 426 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 RASGRP1O95267 797 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 DLGAP3O95886 979 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 CH25HO95992 272 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 THY1P04216 161 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 CCNYL3P0C7X3 344 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 TNFSF8P32971 234 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 ACSL1P33121 698 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 MAGEA10P43363 369 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-217ENST00000466159 OMPP47874 163 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 ID2Q02363 134 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 MXD1Q05195 221 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.37□□□□□ -1.07
SYNE1-217ENST00000466159 ST3GAL3Q11203 375 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 CDC20Q12834 499 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 C1DQ13901 141 aaKnown RBP8.37□□□□□ -1.07
SYNE1-217ENST00000466159 RUNX2Q13950 521 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 NFATC4Q14934 902 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 TRAM2Q15035 370 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 PRRT3Q5FWE3 981 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 RNLSQ5VYX0 342 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 MFSD12Q6NUT3 480 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 RRM2BQ7LG56 351 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 LRRC25Q8N386 305 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-217ENST00000466159 TMEM163Q8TC26 289 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 GNPDA2Q8TDQ7 276 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 RNFT2Q96EX2 444 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 OR2A14Q96R47 310 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 OR2A5Q96R48 311 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 INIPQ9NRY2 104 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 C14orf119Q9NWQ9 140 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 LOC105369274A0A096LPK9 316 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 LOC102723532A0A0G2JNH3 316 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 CENPVL1A0A0U1RR11 272 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 HYKKA2RU49 373 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 TMEM221A6NGB7 291 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF860A6NHJ4 632 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 PLD2O14939 933 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 RGS5O15539 181 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 UBXN7O94888 489 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 SLC35G6P0C7Q6 338 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 POLR2CP19387 275 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-217ENST00000466159 ETV6P41212 452 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 GPR4P46093 362 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 RGS8P57771 180 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-217ENST00000466159 TNFRSF17Q02223 184 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 DLX2Q07687 328 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-217ENST00000466159 TSPAN31Q12999 210 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 FAM214AQ32MH5 1076 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 CCNJQ5T5M9 372 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 PPP2R2DQ66LE6 453 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 SLC30A6Q6NXT4 461 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 FRRS1Q6ZNA5 592 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 TRIM69Q86WT6 500 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 OR4N4Q8N0Y3 316 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 OR10G6Q8NH81 332 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 CEP19Q96LK0 163 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 WDR92Q96MX6 357 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 MCHR1Q99705 422 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 SMURF1Q9HCE7 757 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 CPNE5Q9HCH3 593 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 CALML5Q9NZT1 146 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 ANKMY1Q9P2S6 941 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 KLHL3Q9UH77 587 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 IL20RAQ9UHF4 553 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 YARS2Q9Y2Z4 477 aaKnown RBP8.36□□□□□ -1.07
SYNE1-217ENST00000466159 SPIN1Q9Y657 262 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-217ENST00000466159 KNL1Q8NG31 2342 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 A0A075B6Q4 140 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 GSAPA4D1B5 854 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF670-ZNF695F2Z2N8 137 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 LOC110117498-PIK3R3F6TDL0 507 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 PRODHO43272 600 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms