RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ARHGAP33O14559 1287 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 AIFM1O95831 613 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 ACVR2AP27037 513 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 MASP1P48740 699 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 CTBSQ01459 385 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 AMZ1Q400G9 498 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 PLBD1Q6P4A8 553 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 ATP6V1C2Q8NEY4 427 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 OR6T1Q8NGN1 323 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 NEURL3Q96EH8 262 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 SAMD8Q96LT4 415 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 WACQ9BTA9 647 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 SGPP1Q9BX95 441 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 SP140LQ9H930 580 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 STARD5Q9NSY2 213 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 STUB1Q9UNE7 303 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 C2orf92A0A1B0GVN3 265 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 CPED1A4D0V7 1026 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 CLDN24A6NM45 220 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 YY2O15391 372 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 HOXC11O43248 304 aaPredicted RBP10.95□□□□□ -0.66
NPHP4-204ENST00000460696 NDUFV2P19404 249 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 E2F2Q14209 437 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 LTB4RQ15722 352 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 ZNF181Q2M3W8 571 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.95□□□□□ -0.66
NPHP4-204ENST00000460696 C19orf43Q9BQ61 176 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 ACTRT3Q9BYD9 372 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 GSDMCQ9BYG8 508 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 SAP130Q9H0E3 1048 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 ZNF639Q9UID6 485 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 ZFR2Q9UPR6 939 aaKnown RBP10.95□□□□□ -0.66
NPHP4-204ENST00000460696 DNMT3AQ9Y6K1 912 aaPredicted RBP10.95□□□□□ -0.66
NPHP4-204ENST00000460696 ISPDA4D126 451 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 SSNA1O43805 119 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 LCMT2O60294 686 aaKnown RBP10.95□□□□□ -0.66
NPHP4-204ENST00000460696 MRPS14O60783 128 aaKnown RBP10.95□□□□□ -0.66
NPHP4-204ENST00000460696 UPK1BO75841 260 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 CXCL12P48061 93 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 RPS15AP62244 130 aaKnown RBP10.95□□□□□ -0.66
NPHP4-204ENST00000460696 PIP5KL1Q5T9C9 394 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 METRNLQ641Q3 311 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 OAFQ86UD1 273 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 EGFL6Q8IUX8 553 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 CPOQ8IVL8 374 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 LAS2Q8IYD9 372 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 CYB561A3Q8NBI2 242 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 SLC7A13Q8TCU3 470 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 MRGPRX3Q96LB0 322 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 PHOX2BQ99453 314 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 KLHL31Q9H511 634 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 MKKSQ9NPJ1 570 aaPredicted RBP10.95□□□□□ -0.66
NPHP4-204ENST00000460696 ING3Q9NXR8 418 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 CLEC2DQ9UHP7 191 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 EXOSC1Q9Y3B2 195 aaKnown RBP10.95□□□□□ -0.66
NPHP4-204ENST00000460696 CLCA3PQ9Y6N3 262 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 OR2A25A4D2G3 310 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 SOBPA7XYQ1 873 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 AGAP14A8MT82 685 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 ZNF3P17036 446 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 SSTR4P31391 388 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 POU6F2P78424 691 aaPredicted RBP10.95□□□□□ -0.66
NPHP4-204ENST00000460696 LRIT3Q3SXY7 679 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 FCRLBQ6BAA4 426 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 CHMP1BQ7LBR1 199 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 JAZF1Q86VZ6 243 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 LRRC17Q8N6Y2 441 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 CSNK1A1LQ8N752 337 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 OR51L1Q8NGJ5 315 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 FANK1Q8TC84 345 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 CHPT1Q8WUD6 406 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 CDS1Q92903 461 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 PMEPA1Q969W9 287 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 AMDHD1Q96NU7 426 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 OR7D2Q96RA2 312 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 TM9SF2Q99805 663 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 DPH1Q9BZG8 443 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 ACSS1Q9NUB1 689 aaPredicted RBP10.95□□□□□ -0.66
NPHP4-204ENST00000460696 FAM86C1Q9NVL1 165 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 DOCK6Q96HP0 2047 aa10.95□□□□□ -0.66
NPHP4-204ENST00000460696 A0A1W2PQL4 384 aaPredicted RBP10.94□□□□□ -0.66
NPHP4-204ENST00000460696 PROM1O43490 865 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 PRSS23O95084 383 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 TCEA1P23193 301 aaKnown RBP10.94□□□□□ -0.66
NPHP4-204ENST00000460696 AHCYP23526 432 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 PRPH2P23942 346 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 ATP5A1P25705 553 aaKnown RBP10.94□□□□□ -0.66
NPHP4-204ENST00000460696 GRK6P43250 576 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 RAE1P78406 368 aaKnown RBP10.94□□□□□ -0.66
NPHP4-204ENST00000460696 HTRA4P83105 476 aaPredicted RBP10.94□□□□□ -0.66
NPHP4-204ENST00000460696 RPE65Q16518 533 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 C11orf88Q6PI97 169 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 SLC46A3Q7Z3Q1 461 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 HCAR2Q8TDS4 363 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 SLC41A3Q96GZ6 507 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 NDC1Q9BTX1 674 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 PNO1Q9NRX1 252 aaKnown RBP10.94□□□□□ -0.66
NPHP4-204ENST00000460696 POLR1DQ9Y2S0 133 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 AP1M2Q9Y6Q5 423 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms