RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 COX20Q5RI15 118 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 HEPHL1Q6MZM0 1159 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 OPN5Q6U736 354 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 LYPD8Q6UX82 237 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 C16orf47Q6ZP98 133 aaPredicted RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 WDR53Q7Z5U6 358 aaPredicted RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 GPALPP1Q8IXQ4 340 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 SLC34A3Q8N130 599 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 HORMAD2Q8N7B1 307 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 OR5D16Q8NGK9 328 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 FAM110BQ8TC76 370 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 PNPT1Q8TCS8 783 aaKnown RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 JADE3Q92613 823 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 EXTL1Q92935 676 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 SLC39A3Q9BRY0 314 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 YIPF4Q9BSR8 244 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 THUMPD3Q9BV44 507 aaKnown RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 BTBD2Q9BX70 525 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 C1orf21Q9H246 121 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 KAT8Q9H7Z6 458 aaKnown RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 EXD2Q9NVH0 621 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 TUBD1Q9UJT1 453 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 MRTO4Q9UKD2 239 aaKnown RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 CBLCQ9ULV8 474 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 LIPT1Q9Y234 373 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 AP3M1Q9Y2T2 418 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 OR10H1Q9Y4A9 318 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 NPFFR2Q9Y5X5 522 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 DSPP15924 2871 aaKnown RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 EXPH5Q8NEV8 1989 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 TNFRSF21O75509 655 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 FBXO45P0C2W1 286 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 LCN1P31025 176 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 CRATP43155 626 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 HLCSP50747 726 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 PSMD4P55036 377 aaKnown RBP10.68□□□□□ -0.7
SCN9A-204ENST00000452182 MTPNP58546 118 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 POU6F2P78424 691 aaPredicted RBP10.68□□□□□ -0.7
SCN9A-204ENST00000452182 MRPS22P82650 360 aaKnown RBP10.68□□□□□ -0.7
SCN9A-204ENST00000452182 BNIP1Q12981 228 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 RAPSNQ13702 412 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 NNATQ16517 81 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 DECR1Q16698 335 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 ATAD3BQ5T9A4 648 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 TNFAIP8L2Q6P589 184 aaPredicted RBP10.68□□□□□ -0.7
SCN9A-204ENST00000452182 IGFL3Q6UXB1 125 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 SERPINA11Q86U17 422 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 HPS6Q86YV9 775 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 BEST3Q8N1M1 668 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 COX18Q8N8Q8 333 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 CHDHQ8NE62 594 aaPredicted RBP10.68□□□□□ -0.7
SCN9A-204ENST00000452182 OR4N2Q8NGD1 307 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 FBXO30Q8TB52 745 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 PIK3R3Q92569 461 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 HAS2Q92819 552 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 CDS1Q92903 461 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 CRELD1Q96HD1 420 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 ADNPQ9H2P0 1102 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 ABCD2Q9UBJ2 740 aa10.68□□□□□ -0.7
SCN9A-204ENST00000452182 TPRP12270 2363 aaKnown RBP10.67□□□□□ -0.7
SCN9A-204ENST00000452182 OR6C70A6NIJ9 312 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 A8MVJ9 347 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 B2RBV5 119 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 EBAG9O00559 213 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 TSPAN2O60636 221 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 HNRNPCL1O60812 293 aaKnown RBP10.67□□□□□ -0.7
SCN9A-204ENST00000452182 PPM1BO75688 479 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 KCNK2O95069 426 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 IL33O95760 270 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 OR12D1P0DN82 309 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 ETFAP13804 333 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 CPOXP36551 454 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 SOX3P41225 446 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 MAP1BP46821 2468 aaKnown RBP10.67□□□□□ -0.7
SCN9A-204ENST00000452182 CYB561P49447 251 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 PNLIPRP2P54317 469 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 CASP9P55211 416 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 DSTNP60981 165 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 PLCXD2Q0VAA5 305 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 SELPLGQ14242 412 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 NTRK2Q16620 822 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.67□□□□□ -0.7
SCN9A-204ENST00000452182 ZNF791Q3KP31 576 aaPredicted RBP10.67□□□□□ -0.7
SCN9A-204ENST00000452182 ARHGAP11BQ3KRB8 267 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 LINC00303Q3SY05 128 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 C16orf89Q6UX73 402 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 LINC00696Q6ZRV3 163 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 NET1Q7Z628 596 aaPredicted RBP10.67□□□□□ -0.7
SCN9A-204ENST00000452182 PGAM4Q8N0Y7 254 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 TMEM156Q8N614 296 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 METTL25Q8N6Q8 603 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 BCORP1Q8N888 145 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 XAGE5Q8WWM1 108 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 ASB15Q8WXK1 588 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 TM9SF4Q92544 642 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 TTC9Q92623 222 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 DIO2Q92813 273 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 RAB8BQ92930 207 aa10.67□□□□□ -0.7
SCN9A-204ENST00000452182 TMBIM1Q969X1 311 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms