RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 SNPHO15079 494 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 HIST1H1TP22492 207 aaPredicted RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 PSMA1P25786 263 aaKnown RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 AKT2P31751 481 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 RPS19P39019 145 aaKnown RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 HOXC5Q00444 222 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 RHAGQ02094 409 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 FUT5Q11128 374 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 MAP4K2Q12851 820 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 C1DQ13901 141 aaKnown RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 DGLUCYQ7Z3D6 616 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 GJD3Q8N144 294 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 MS4A6EQ96DS6 147 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 TRMT61AQ96FX7 289 aaKnown RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 EGLN3Q9H6Z9 239 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 SP140LQ9H930 580 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 CPNE5Q9HCH3 593 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 SLC6A20Q9NP91 592 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 WSB2Q9NYS7 404 aaPredicted RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 GPR52Q9Y2T5 361 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 TTC28Q96AY4 2481 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 LINC00854A0A1B0GVQ3 168 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 KCNK2O95069 426 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 EPPINO95925 133 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 HBQ1P09105 142 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 PTNP21246 168 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 AZGP1P25311 298 aaKnown RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 PKLRP30613 574 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 MC3RP41968 323 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 LIMK1P53667 647 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 TAS2R41P59536 307 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 ALDH6A1Q02252 535 aaKnown RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 CLEC12AQ5QGZ9 265 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 MEDAGQ5VYS4 303 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 ACSM5Q6NUN0 579 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 VASH1Q7L8A9 365 aaPredicted RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 TRIM69Q86WT6 500 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 OR9Q1Q8NGQ5 310 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 OR9A2Q8NGT5 310 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 BBS10Q8TAM1 723 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 KAT2AQ92830 837 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 SLC30A2Q9BRI3 323 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 SPATA5L1Q9BVQ7 753 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 PLA2G12AQ9BZM1 189 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 PITHD1Q9GZP4 211 aaPredicted RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 TMEM168Q9H0V1 697 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 SMURF1Q9HCE7 757 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 MAN2C1Q9NTJ4 1040 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 TAS2R7Q9NYW3 318 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 ANKMY1Q9P2S6 941 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 KLHL3Q9UH77 587 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 ACAD8Q9UKU7 415 aa10.01□□□□□ -0.81
CUX1-205ENST00000425244 LSM2Q9Y333 95 aaKnown RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 DNMT3AQ9Y6K1 912 aaPredicted RBP10.01□□□□□ -0.81
CUX1-205ENST00000425244 SMIM30A4D0T7 59 aa10□□□□□ -0.81
CUX1-205ENST00000425244 CPSF4LA6NMK7 179 aaKnown RBP10□□□□□ -0.81
CUX1-205ENST00000425244 ISM1B1AKI9 464 aa10□□□□□ -0.81
CUX1-205ENST00000425244 CHURC1-FNTBB4DL54 471 aa10□□□□□ -0.81
CUX1-205ENST00000425244 SSX4O60224 188 aa10□□□□□ -0.81
CUX1-205ENST00000425244 TP53P04637 393 aaPredicted RBP10□□□□□ -0.81
CUX1-205ENST00000425244 ATP5A1P25705 553 aaKnown RBP10□□□□□ -0.81
CUX1-205ENST00000425244 AVPR1BP47901 424 aa10□□□□□ -0.81
CUX1-205ENST00000425244 GIPRP48546 466 aa10□□□□□ -0.81
CUX1-205ENST00000425244 TRA2BP62995 288 aaKnown RBP10□□□□□ -0.81
CUX1-205ENST00000425244 RPL6Q02878 288 aaKnown RBP10□□□□□ -0.81
CUX1-205ENST00000425244 MADCAM1Q13477 382 aa10□□□□□ -0.81
CUX1-205ENST00000425244 NCF4Q15080 339 aa10□□□□□ -0.81
CUX1-205ENST00000425244 TMEM35AQ53FP2 167 aa10□□□□□ -0.81
CUX1-205ENST00000425244 SYT14P1Q58G82 188 aa10□□□□□ -0.81
CUX1-205ENST00000425244 ABHD17CQ6PCB6 329 aa10□□□□□ -0.81
CUX1-205ENST00000425244 C19orf48Q6RUI8 117 aa10□□□□□ -0.81
CUX1-205ENST00000425244 SPATC1Q76KD6 591 aa10□□□□□ -0.81
CUX1-205ENST00000425244 SHFQ7M4L6 423 aa10□□□□□ -0.81
CUX1-205ENST00000425244 TTLQ8NG68 377 aa10□□□□□ -0.81
CUX1-205ENST00000425244 SUN3Q8TAQ9 357 aa10□□□□□ -0.81
CUX1-205ENST00000425244 ZG16BQ96DA0 208 aa10□□□□□ -0.81
CUX1-205ENST00000425244 FCRL4Q96PJ5 515 aa10□□□□□ -0.81
CUX1-205ENST00000425244 SYNPO2LQ9H987 977 aa10□□□□□ -0.81
CUX1-205ENST00000425244 ZSCAN32Q9NX65 697 aa10□□□□□ -0.81
CUX1-205ENST00000425244 CNIH4Q9P003 139 aa10□□□□□ -0.81
CUX1-205ENST00000425244 CRNNQ9UBG3 495 aaPredicted RBP10□□□□□ -0.81
CUX1-205ENST00000425244 SLC17A4Q9Y2C5 497 aa10□□□□□ -0.81
CUX1-205ENST00000425244 SNRNP200O75643 2136 aaKnown RBP10□□□□□ -0.81
CUX1-205ENST00000425244 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10□□□□□ -0.81
CUX1-205ENST00000425244 IGHV1OR15-9A0A0B4J2B8 117 aa10□□□□□ -0.81
CUX1-205ENST00000425244 A8MU76 341 aa10□□□□□ -0.81
CUX1-205ENST00000425244 AGRPO00253 132 aa10□□□□□ -0.81
CUX1-205ENST00000425244 MTRF1O75570 445 aaKnown RBP10□□□□□ -0.81
CUX1-205ENST00000425244 UBL4AP11441 157 aa10□□□□□ -0.81
CUX1-205ENST00000425244 TNFSF8P32971 234 aa10□□□□□ -0.81
CUX1-205ENST00000425244 DEFA1P59665 94 aa10□□□□□ -0.81
CUX1-205ENST00000425244 DEFA3P59666 94 aa10□□□□□ -0.81
CUX1-205ENST00000425244 CHRNEQ04844 493 aa10□□□□□ -0.81
CUX1-205ENST00000425244 KHDRBS1Q07666 443 aaKnown RBP eCLIP10□□□□□ -0.81
CUX1-205ENST00000425244 CDC20Q12834 499 aa10□□□□□ -0.81
CUX1-205ENST00000425244 NFATC4Q14934 902 aa10□□□□□ -0.81
CUX1-205ENST00000425244 LTB4RQ15722 352 aa10□□□□□ -0.81
CUX1-205ENST00000425244 ZNF311Q5JNZ3 666 aa10□□□□□ -0.81
CUX1-205ENST00000425244 TMEM201Q5SNT2 666 aa10□□□□□ -0.81
CUX1-205ENST00000425244 KIAA0895LQ68EN5 471 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms