RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FHL5Q5TD97 284 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 GTF2IRD2BQ6EKJ0 949 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 PRR23CQ6ZRP0 262 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 QSOX2Q6ZRP7 698 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 GALNT10Q86SR1 603 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 GTF2IRD2Q86UP8 949 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 MUL1Q969V5 352 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 GIMAP5Q96F15 307 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 GABARAPL3Q9BY60 117 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 RIBC2Q9H4K1 309 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 DUSP22Q9NRW4 184 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 AKAP7Q9P0M2 348 aaPredicted RBP16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 ENOPH1Q9UHY7 261 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 FAM32AQ9Y421 112 aaKnown RBP16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 PRR33A8MZF0 331 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 NTN3O00634 580 aaPredicted RBP16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 GCM2O75603 506 aaPredicted RBP16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 ANGPTL1O95841 491 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 CCNA2P20248 432 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 PTGER1P34995 402 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 POLR2IP36954 125 aaKnown RBP16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 MAN2A2P49641 1150 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 TEKQ02763 1124 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 RHBDD2Q6NTF9 364 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 FAM111BQ6SJ93 734 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 SVOPQ8N4V2 548 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 ATG16L2Q8NAA4 619 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 IPCEF1Q8WWN9 437 aaPredicted RBP16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 PMM1Q92871 262 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 CTHRC1Q96CG8 243 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 C16orf58Q96GQ5 468 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 OR6C1Q96RD1 312 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 YIPF4Q9BSR8 244 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 PIGUQ9H490 435 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 SMOC1Q9H4F8 434 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 DUSP21Q9H596 190 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 PLGRKTQ9HBL7 147 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 ADAP2Q9NPF8 381 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 SATB2Q9UPW6 733 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 GPC6Q9Y625 555 aaPredicted RBP16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 MAU2Q9Y6X3 613 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 ASXL3Q9C0F0 2248 aa16.98■□□□□ 0.31
CCDC88C-203ENST00000389856 LNP1A1A4G5 178 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 CASC3O15234 703 aaKnown RBP16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 PRAMEF2O60811 474 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 OPN1SWP03999 348 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 IFNW1P05000 195 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 ANXA8P13928 327 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 RAPSNQ13702 412 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 IL11RAQ14626 422 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 SYPL1Q16563 259 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 LAIR2Q6ISS4 152 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 AGBL5Q8NDL9 886 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 OR10Q1Q8NGQ4 319 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 SLC9A6Q92581 669 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 COL21A1Q96P44 957 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 PSD2Q9BQI7 771 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 DHCR7Q9UBM7 475 aaKnown RBP16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 SLC13A4Q9UKG4 626 aa16.97■□□□□ 0.31
CCDC88C-203ENST00000389856 MFN2O95140 757 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 ATE1O95260 518 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 IFNA16P05015 189 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 ZNF806P0C7X5 589 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 TNNI3P19429 210 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 OR1D4P47884 311 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 CLK3P49761 638 aaKnown RBP16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 CRYBA2P53672 197 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 SYT16Q17RD7 645 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 TRMT12Q53H54 448 aaKnown RBP16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 MFSD4BQ5TF39 518 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 TCEAL6Q6IPX3 200 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 HEPHL1Q6MZM0 1159 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 TMPRSS9Q7Z410 1059 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 PPP1R3BQ86XI6 285 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 SLITRK4Q8IW52 837 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 GIPC3Q8TF64 312 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 TCEAL3Q969E4 200 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 PTCHD1Q96NR3 888 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 PRRX2Q99811 253 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 POLE3Q9NRF9 147 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 SLC9A8Q9Y2E8 581 aa16.96■□□□□ 0.31
CCDC88C-203ENST00000389856 NUP210LQ5VU65 1888 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 TMX2-CTNND1H3BSU7 103 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 SCRG1O75711 98 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 CDC123O75794 336 aaPredicted RBP16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 ALPPP05187 535 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 HTR1AP08908 422 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 MGAT2Q10469 447 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 ZNF155Q12901 538 aaPredicted RBP16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 PPP1R8Q12972 351 aaKnown RBP16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 NPRL3Q12980 569 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 ARHGAP11BQ3KRB8 267 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 RPS26P11Q5JNZ5 115 aaPredicted RBP16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 ANKRD34AQ69YU3 496 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 LINC00299Q6ZSB3 139 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 COX18Q8N8Q8 333 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 OR7G1Q8NGA0 311 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 CLIP3Q96DZ5 547 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 HRASLS5Q96KN8 279 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 ART5Q96L15 291 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms