RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 IGHA2P01877 340 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 POLR2IP36954 125 aaKnown RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 MESP2Q0VG99 397 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 HTR4Q13639 388 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 KIAA1958Q8N8K9 716 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 PROKR2Q8NFJ6 384 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 LRR1Q96L50 414 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 GLIPR2Q9H4G4 154 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 PCDHGB7Q9Y5F8 929 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 TSPAN11A1L157 253 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 C17orf105B2RV13 164 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 TLX3O43711 291 aaPredicted RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 AKAP8O43823 692 aaKnown RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 SYPP08247 313 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 CKMT1AP12532 417 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 DRD3P35462 400 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 ZNF750Q32MQ0 723 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 ALG10BQ5I7T1 473 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 FAM111BQ6SJ93 734 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 PTRH1Q86Y79 214 aaKnown RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 DEFB123Q8N688 67 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 MFSD2AQ8NA29 543 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 FAM174AQ8TBP5 190 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 SUN5Q8TC36 379 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 TBC1D20Q96BZ9 403 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 ELL3Q9HB65 397 aaPredicted RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 ABI3Q9P2A4 366 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 PRAMEF33A0A0G2JMD5 474 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 CCDC182A6NF36 153 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 GABRG2P18507 467 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 TXNL4AP83876 142 aaKnown RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 CD83Q01151 205 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 GBX1Q14549 363 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 RSC1A1Q92681 617 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 TMEM80Q96HE8 168 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 CNDP2Q96KP4 475 aaKnown RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 KCNN2Q9H2S1 579 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 COQ3Q9NZJ6 369 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 AP1M2Q9Y6Q5 423 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 PTPRFP10586 1907 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 H0YC42 278 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 LCMT2O60294 686 aaKnown RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 CSF2P04141 144 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 SMIM18P0DKX4 95 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 RAB14P61106 215 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 MAT1AQ00266 395 aaKnown RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 CHRNEQ04844 493 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 MEDAGQ5VYS4 303 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 C19orf47Q8N9M1 422 aaKnown RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 FANK1Q8TC84 345 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 FAM46AQ96IP4 442 aaKnown RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 ERMAPQ96PL5 475 aaPredicted RBP13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 OR7D2Q96RA2 312 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 C14orf119Q9NWQ9 140 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 UCKL1Q9NWZ5 548 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 ALKBH4Q9NXW9 302 aa13.35□□□□□ -0.27
SHROOM1-203ENST00000378679 TRAPPC13A5PLN9 417 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 SOX1O00570 391 aaPredicted RBP13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 NCS1P62166 190 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 LTB4RQ15722 352 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 MMP21Q8N119 569 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 FAM86B1Q8N7N1 296 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 WDR20Q8TBZ3 569 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 TRIM63Q969Q1 353 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 SPRTNQ9H040 489 aaPredicted RBP13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 KLHL31Q9H511 634 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 STMN3Q9NZ72 180 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 MBD1Q9UIS9 605 aaPredicted RBP13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 PCDHGA8Q9Y5G5 932 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 NARSO43776 548 aaKnown RBP13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 GKN3PP0CG01 181 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 CD1EP15812 388 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 NR0B1P51843 470 aaKnown RBP13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 DCDC5Q6ZRR9 648 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 MEX3DQ86XN8 651 aaKnown RBP13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 LAS2Q8IYD9 372 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 IQCF1Q8N6M8 205 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 OR2A1Q8NGT9 310 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 EFHD2Q96C19 240 aaPredicted RBP13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 AMDHD1Q96NU7 426 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 CNIH4Q9P003 139 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 TMEM9Q9P0T7 183 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 ZFR2Q9UPR6 939 aaKnown RBP13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 TPRP12270 2363 aaKnown RBP13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 SPAG17Q6Q759 2223 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 KRBA1A5PL33 1030 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 J3QLW9 94 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 ZNF19P17023 458 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 GAB1Q13480 694 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 KLHL24Q6TFL4 600 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 IGFN1Q86VF2 1251 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 OR52R1Q8NGF1 315 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 TCTN2Q96GX1 697 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 STRADBQ9C0K7 418 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 QRSL1Q9H0R6 528 aaKnown RBP13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 ICKQ9UPZ9 632 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 RNF6Q9Y252 685 aa13.34□□□□□ -0.27
SHROOM1-203ENST00000378679 TMPRSS11DO60235 418 aa13.33□□□□□ -0.28
SHROOM1-203ENST00000378679 GREM1O60565 184 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms