RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 ITGA10O75578 1167 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 OR2B6P58173 313 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 MPEG1Q2M385 716 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 TMEM201Q5SNT2 666 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 B3GNTL1Q67FW5 361 aaPredicted RBP8.54□□□□□ -1.04
UPF2-202ENST00000357604 ATG14Q6ZNE5 492 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 SFTPA2Q8IWL1 248 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 C10orf82Q8WW14 230 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 CDS1Q92903 461 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 ZBTB8AQ96BR9 441 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 SORT1Q99523 831 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 VCX3AQ9NNX9 186 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 EMC9Q9Y3B6 208 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 ASB4Q9Y574 426 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 HOXD4P09016 255 aaPredicted RBP8.54□□□□□ -1.04
UPF2-202ENST00000357604 MEOX1P50221 254 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 DGKQP52824 942 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 ZNF551Q7Z340 670 aaPredicted RBP8.54□□□□□ -1.04
UPF2-202ENST00000357604 VANGL1Q8TAA9 524 aaPredicted RBP8.54□□□□□ -1.04
UPF2-202ENST00000357604 SPNS1Q9H2V7 528 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 CXorf21Q9HAI6 301 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 CHD5Q8TDI0 1954 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 ERVH48-1M5A8F1 160 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 LGALS3BPQ08380 585 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 TNFAIP8L3Q5GJ75 292 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 ZNF100Q8IYN0 542 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 PRR22Q8IZ63 422 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 POU5F2Q8N7G0 328 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 PLAC1Q9HBJ0 212 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 SDR39U1Q9NRG7 319 aaPredicted RBP8.54□□□□□ -1.04
UPF2-202ENST00000357604 PCDHGA9Q9Y5G4 932 aaKnown RBP8.54□□□□□ -1.04
UPF2-202ENST00000357604 PTGDR2Q9Y5Y4 395 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 TCRBV16S1A1N1A0A5B0 115 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 NPIPA5E9PKD4 350 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 ADAMDEC1O15204 470 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 BMP7P18075 431 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 HNRNPFP52597 415 aaKnown RBP8.54□□□□□ -1.04
UPF2-202ENST00000357604 ATP12AP54707 1039 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 MLF1P58340 268 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 RHAGQ02094 409 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 ST3GAL3Q11203 375 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 ADPRMQ3LIE5 342 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 CLEC4FQ8N1N0 589 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 OR10A6Q8NH74 314 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 GPATCH1Q9BRR8 931 aaKnown RBP8.54□□□□□ -1.04
UPF2-202ENST00000357604 ITPAQ9BY32 194 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 NGBQ9NPG2 151 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 IL1RAPQ9NPH3 570 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 DUSP22Q9NRW4 184 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 NPIPA1Q9UND3 350 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 PRR19A6NJB7 356 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 DEAF1O75398 565 aaPredicted RBP8.53□□□□□ -1.04
UPF2-202ENST00000357604 FASP25445 335 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 SLC7A2P52569 658 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 TRAP1Q12931 704 aaKnown RBP8.53□□□□□ -1.04
UPF2-202ENST00000357604 PIGGQ5H8A4 983 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 UBAP2Q5T6F2 1119 aaKnown RBP8.53□□□□□ -1.04
UPF2-202ENST00000357604 GOLM1Q8NBJ4 401 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 EFHD2Q96C19 240 aaPredicted RBP8.53□□□□□ -1.04
UPF2-202ENST00000357604 ELP4Q96EB1 424 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 ZNF285Q96NJ3 590 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 DKK4Q9UBT3 224 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 TRPM6Q9BX84 2022 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 NKX2-8O15522 239 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 PRR35P0CG20 571 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 MERTKQ12866 999 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 NNATQ16517 81 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 DEPDC4Q8N2C3 294 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 OR11G2Q8NGC1 345 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 DNAJA4Q8WW22 397 aaPredicted RBP8.53□□□□□ -1.04
UPF2-202ENST00000357604 NANOS1Q8WY41 292 aaKnown RBP8.53□□□□□ -1.04
UPF2-202ENST00000357604 GLIPR2Q9H4G4 154 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 A0A1W2PRG6 482 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 FOXS1O43638 330 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 ETS2P15036 469 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 PTGER4P35408 488 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 RANBP1P43487 201 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 TAF13Q15543 124 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 CRTC2Q53ET0 693 aaPredicted RBP8.53□□□□□ -1.04
UPF2-202ENST00000357604 PRAMEF17Q5VTA0 474 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 FIGNL1Q6PIW4 674 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 DNM1P34Q6PK57 102 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 GHDCQ8N2G8 530 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 TEX47Q8TBZ9 253 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 LMF2Q9BU23 707 aaKnown RBP8.53□□□□□ -1.04
UPF2-202ENST00000357604 MENTQ9BUN1 341 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 LRMDAQ9H2I8 198 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 TMPRSS11DO60235 418 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 OR2J2O76002 312 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 C1QAP02745 245 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 RYKP34925 604 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 POLR2HP52434 150 aaKnown RBP8.53□□□□□ -1.04
UPF2-202ENST00000357604 DCST1Q5T197 706 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 GLYATQ6IB77 296 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 MFSD12Q6NUT3 480 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 BEST3Q8N1M1 668 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 OR2T11Q8NH01 316 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 SLC38A2Q96QD8 506 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 EBF4Q9BQW3 602 aa8.53□□□□□ -1.04
UPF2-202ENST00000357604 MRPS18BQ9Y676 258 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms