RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 CEP68Q76N32 757 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 BMP8AQ7Z5Y6 402 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 CCDC190Q86UF4 302 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 WDR48Q8TAF3 677 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 WDR20Q8TBZ3 569 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 ROPN1LQ96C74 230 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 INTS12Q96CB8 462 aaKnown RBP9.5□□□□□ -0.89
SYNE1-203ENST00000354674 SMAD5Q99717 465 aaKnown RBP9.5□□□□□ -0.89
SYNE1-203ENST00000354674 PCBD2Q9H0N5 130 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 ZNF490Q9ULM2 529 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-203ENST00000354674 PRAMEF33A0A0G2JMD5 474 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 ASPDHA6ND91 283 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 MYL12BO14950 172 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 BCAT2O15382 392 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-203ENST00000354674 PCDHGA12O60330 932 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 RFPL3O75679 317 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 FABP1P07148 127 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 JUNDP17535 347 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 MYL12AP19105 171 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 PRPH2P23942 346 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 SOX3P41225 446 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 ARFIP1P53367 373 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 IRF8Q02556 426 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 RIN1Q13671 783 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 LTB4RQ15722 352 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 ZNF542PQ5EBM4 170 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 PRAMEF14Q5SWL7 426 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 PRAMEF13Q5VWM6 474 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 SAXO2Q658L1 398 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 SUSD1Q6UWL2 747 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 ASB18Q6ZVZ8 466 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 PRSS48Q7RTY5 328 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 GHDCQ8N2G8 530 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 RAB42Q8N4Z0 105 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 LMNTD1Q8N9Z9 388 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 DTWD2Q8NBA8 298 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 ZNF675Q8TD23 568 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 NARS2Q96I59 477 aaKnown RBP9.5□□□□□ -0.89
SYNE1-203ENST00000354674 OPALINQ96PE5 141 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 KCNC2Q96PR1 638 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 RBM4BQ9BQ04 359 aaKnown RBP9.5□□□□□ -0.89
SYNE1-203ENST00000354674 RBM4Q9BWF3 364 aaKnown RBP9.5□□□□□ -0.89
SYNE1-203ENST00000354674 CLEC4MQ9H2X3 399 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-203ENST00000354674 KIF17Q9P2E2 1029 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 APOBEC3BQ9UH17 382 aaKnown RBP9.5□□□□□ -0.89
SYNE1-203ENST00000354674 LHX6Q9UPM6 363 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 PCDHGB2Q9Y5G2 931 aa9.5□□□□□ -0.89
SYNE1-203ENST00000354674 GON4LQ3T8J9 2241 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 KIR2DS5A0A0G2JLQ3 304 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 A0A0G2JNG1 304 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 LINC00862A6NCI5 91 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 KIR2DS3K7RE56 304 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 PRAMEF10O60809 474 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 ULK1O75385 1050 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 MPC2O95563 127 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 CSF3P09919 207 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 RAP2AP10114 183 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 CKMT1AP12532 417 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 PCSK2P16519 638 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 POU3F2P20265 443 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-203ENST00000354674 AFF3P51826 1226 aaKnown RBP9.49□□□□□ -0.89
SYNE1-203ENST00000354674 GBX2P52951 348 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-203ENST00000354674 CSTF1Q05048 431 aaKnown RBP9.49□□□□□ -0.89
SYNE1-203ENST00000354674 KIR2DS5Q14953 304 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 XKR6Q5GH73 641 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 PDSS1Q5T2R2 415 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 PEAR1Q5VY43 1037 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-203ENST00000354674 ZNF57Q68EA5 555 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-203ENST00000354674 C8orf82Q6P1X6 216 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-203ENST00000354674 IL27RAQ6UWB1 636 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 NXPE4Q6UWF7 544 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 LAS2Q8IYD9 372 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 TTC29Q8NA56 475 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-203ENST00000354674 PAPD5Q8NDF8 572 aaKnown RBP9.49□□□□□ -0.89
SYNE1-203ENST00000354674 ATP6V1C2Q8NEY4 427 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 KBTBD8Q8NFY9 601 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 ABCD2Q9UBJ2 740 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 TNFRSF10DQ9UBN6 386 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 PRELID3BQ9Y3B1 194 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 DYRK1BQ9Y463 629 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 LOC105369274A0A096LPK9 316 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 SLC22A23A1A5C7 686 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 SLC28A1O00337 649 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 PLA2G10O15496 165 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 SIX6O95475 246 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 C1GALT1C1LP0DN25 315 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 LBPP18428 481 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 INPP1P49441 399 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 ERVK-25P63136 954 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 BNC1Q01954 994 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 TNK1Q13470 666 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 ZNF528Q3MIS6 628 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 BCL2L15Q5TBC7 163 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 SPATA19Q7Z5L4 167 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 FAM129CQ86XR2 697 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 RIMKLAQ8IXN7 391 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 OR4N4Q8N0Y3 316 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 NAGSQ8N159 534 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 STX19Q8N4C7 294 aa9.49□□□□□ -0.89
SYNE1-203ENST00000354674 MINDY1Q8N5J2 469 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms