RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 KIAA0040Q15053 153 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 PYHIN1Q6K0P9 492 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 FAM83HQ6ZRV2 1179 aaPredicted RBP13.91□□□□□ -0.18
TCOF1-201ENST00000323668 KRT77Q7Z794 578 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 SLIRPQ9GZT3 109 aaKnown RBP13.91□□□□□ -0.18
TCOF1-201ENST00000323668 OR1A2Q9Y585 309 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 C17orf113A0A1B0GUU1 675 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 TMEM202A6NGA9 273 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 CSO75390 466 aaKnown RBP13.91□□□□□ -0.18
TCOF1-201ENST00000323668 TOXO94900 526 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 SLC14A1Q13336 389 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 ALG11Q2TAA5 492 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 C4orf46Q504U0 113 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 C3orf38Q5JPI3 329 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 SLC25A25Q6KCM7 469 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 RPTNQ6XPR3 784 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 ZNF782Q6ZMW2 699 aaPredicted RBP13.91□□□□□ -0.18
TCOF1-201ENST00000323668 ACOT4Q8N9L9 421 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 HSPA12BQ96MM6 686 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 HS6ST2Q96MM7 605 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 MCCC1Q96RQ3 725 aaPredicted RBP13.91□□□□□ -0.18
TCOF1-201ENST00000323668 GON7Q9BXV9 100 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 DDX31Q9H8H2 851 aaKnown RBP13.91□□□□□ -0.18
TCOF1-201ENST00000323668 CUEDC1Q9NWM3 386 aaPredicted RBP13.91□□□□□ -0.18
TCOF1-201ENST00000323668 HYKKA2RU49 373 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 NAA10P41227 235 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 CAV3P56539 151 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 SNRPGP62308 76 aaKnown RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 SEC23BQ15437 767 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 PEG10Q86TG7 708 aaKnown RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 PLCZ1Q86YW0 608 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 LINC01599Q8WXQ3 324 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 PITHD1Q9GZP4 211 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 DIMT1Q9UNQ2 313 aaKnown RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 TEX13CA0A0J9YWL9 993 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 IQCMA0A1B0GVH7 501 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 A0A1W2PP55 124 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 LATO43561 262 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 HNRNPA1P09651 372 aaKnown RBP eCLIP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 CCL5P13501 91 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 ALAS2P22557 587 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 AHCYP23526 432 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 PRPH2P23942 346 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 VIPR2P41587 438 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 KCNJ5P48544 419 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 PITPNBP48739 271 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 DNASE1L1P49184 302 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 TRA2BP62995 288 aaKnown RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 SIM1P81133 766 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 HOXC5Q00444 222 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 TOR1AIP2Q8NFQ8 470 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 SIPA1Q96FS4 1042 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 CDADC1Q9BWV3 514 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 TRBV2A0A0J9YWF9 115 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 WISP3O95389 354 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 RNF144AP50876 292 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 HNRNPA1L2Q32P51 320 aaKnown RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 BCDIN3DQ7Z5W3 292 aaKnown RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 NLRP8Q86W28 1048 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 CHST4Q8NCG5 386 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 OR10H5Q8NGA6 315 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 OR4F15Q8NGB8 312 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 DOK4Q8TEW6 326 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 SNAPC3Q92966 411 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 CTRCQ99895 268 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 PSD2Q9BQI7 771 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 FER1L6Q2WGJ9 1857 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 BLOC1S5-TXNDC5H3BN57 136 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 UBXN7O94888 489 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 DBIP07108 87 aaKnown RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 GABRA5P31644 462 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 PSMA6P60900 246 aaKnown RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 YBX1P67809 324 aaKnown RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 ADAM8P78325 824 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 IHHQ14623 411 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 MBTPS1Q14703 1052 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 WDR20Q8TBZ3 569 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 TBC1D20Q96BZ9 403 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 TCEAL4Q96EI5 215 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 EGLN3Q9H6Z9 239 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-201ENST00000323668 NUDT15Q9NV35 164 aa13.9□□□□□ -0.18
TCOF1-201ENST00000323668 LOC102723532A0A0G2JNH3 316 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 A0A1B0GVT2 93 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 POLR2CP19387 275 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-201ENST00000323668 APEX1P27695 318 aaKnown RBP13.89□□□□□ -0.19
TCOF1-201ENST00000323668 PTGS2P35354 604 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 TSPAN31Q12999 210 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 LRIT3Q3SXY7 679 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 DPH1Q9BZG8 443 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 BOLA1Q9Y3E2 137 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 FXYD6-FXYD2A0A087WZ82 144 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 LRRTM2O43300 516 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 MAPK3P27361 379 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-201ENST00000323668 POU4F2Q12837 409 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 ZNF267Q14586 743 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-201ENST00000323668 FIGNL1Q6PIW4 674 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 OR9A2Q8NGT5 310 aa13.89□□□□□ -0.19
TCOF1-201ENST00000323668 TRMT10AQ8TBZ6 339 aaKnown RBP13.89□□□□□ -0.19
TCOF1-201ENST00000323668 FCAMRQ8WWV6 532 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms