RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CAPN14A8MX76 684 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 PEX1O43933 1283 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 NAGAP17050 411 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 MATN1P21941 496 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 CHI3L1P36222 383 aaPredicted RBP11.72□□□□□ -0.53
SS18-202ENST00000269138 RFC3P40938 356 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 RFX3P48380 749 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 MRPS22P82650 360 aaKnown RBP11.72□□□□□ -0.53
SS18-202ENST00000269138 INPP5JQ15735 1006 aaPredicted RBP11.72□□□□□ -0.53
SS18-202ENST00000269138 CYP27C1Q4G0S4 372 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 C6orf10Q5SRN2 563 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 PRAMEF20Q5VT98 475 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 SLC22A10Q63ZE4 541 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 RPUSD3Q6P087 351 aaKnown RBP11.72□□□□□ -0.53
SS18-202ENST00000269138 ZCCHC12Q6PEW1 402 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 NUP54Q7Z3B4 507 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 PRICKLE2Q7Z3G6 844 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 TMEM178AQ8NBL3 297 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 OR5D16Q8NGK9 328 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 SPPL2AQ8TCT8 520 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 CDS1Q92903 461 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 SNRNP40Q96DI7 357 aaKnown RBP11.72□□□□□ -0.53
SS18-202ENST00000269138 NEURL3Q96EH8 262 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 AURKBQ96GD4 344 aaPredicted RBP11.72□□□□□ -0.53
SS18-202ENST00000269138 SLC35G5Q96KT7 338 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 OR7D2Q96RA2 312 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 PAIP1Q9H074 479 aaKnown RBP11.72□□□□□ -0.53
SS18-202ENST00000269138 Q9N2J8 555 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 FBXO34Q9NWN3 711 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 FLRT3Q9NZU0 649 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 SLAMF8Q9P0V8 285 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 ARMCX1Q9P291 453 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 ADAM21Q9UKJ8 722 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 KLF13Q9Y2Y9 288 aaPredicted RBP11.72□□□□□ -0.53
SS18-202ENST00000269138 PCDHGB6Q9Y5F9 930 aa11.72□□□□□ -0.53
SS18-202ENST00000269138 SMG1Q96Q15 3661 aaKnown RBP11.72□□□□□ -0.53
SS18-202ENST00000269138 A0A1W2PP18 115 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 OR6C70A6NIJ9 312 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 TTC36A6NLP5 189 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 TP53I11O14683 189 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 WISP2O76076 250 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 KCNK2O95069 426 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 P04436 131 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 HOXB9P17482 250 aaPredicted RBP11.71□□□□□ -0.53
SS18-202ENST00000269138 CNR1P21554 472 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 TRPC1P48995 793 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 DNASE1L1P49184 302 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 TMED10P49755 219 aaKnown RBP11.71□□□□□ -0.53
SS18-202ENST00000269138 MEOX1P50221 254 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 LRRC74AQ0VAA2 488 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 DECR1Q16698 335 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 RNFT1Q5M7Z0 435 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 CCNJQ5T5M9 372 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 TNFAIP8L2Q6P589 184 aaPredicted RBP11.71□□□□□ -0.53
SS18-202ENST00000269138 BHLHB9Q6PI77 547 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 FIGNL1Q6PIW4 674 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 PIGWQ7Z7B1 504 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 ZAR1Q86SH2 424 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 RETREG3Q86VR2 466 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 RNF130Q86XS8 419 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 MSRB3Q8IXL7 192 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 DND1Q8IYX4 353 aaKnown RBP11.71□□□□□ -0.53
SS18-202ENST00000269138 COX18Q8N8Q8 333 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 OR2M7Q8NG81 312 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 PNPT1Q8TCS8 783 aaKnown RBP11.71□□□□□ -0.53
SS18-202ENST00000269138 ADAMTS15Q8TE58 950 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 DIO2Q92813 273 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 COL21A1Q96P44 957 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 PHF12Q96QT6 1004 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 OR51I1Q9H343 314 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 PIGUQ9H490 435 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 SACM1LQ9NTJ5 587 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 ASF1BQ9NVP2 202 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 PCDHB14Q9Y5E9 798 aa11.71□□□□□ -0.53
SS18-202ENST00000269138 A0A096LPI6 279 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 RASAL1O95294 804 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 ANP32DO95626 131 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 IL33O95760 270 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 SNRPB2P08579 225 aaKnown RBP11.7□□□□□ -0.54
SS18-202ENST00000269138 ZCCHC18P0CG32 403 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 CYP4B1P13584 511 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 IL12BP29460 328 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 KRT20P35900 424 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 CASP3P42574 277 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 PNLIPRP2P54317 469 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 POU6F2P78424 691 aaPredicted RBP11.7□□□□□ -0.54
SS18-202ENST00000269138 COX20Q5RI15 118 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 ANGPTL8Q6UXH0 198 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 OLIG3Q7RTU3 272 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 MTDHQ86UE4 582 aaKnown RBP11.7□□□□□ -0.54
SS18-202ENST00000269138 FBXW8Q8N3Y1 598 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 TRIML2Q8N7C3 387 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 FAM110BQ8TC76 370 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 MIPOL1Q8TD10 442 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 GRHL3Q8TE85 626 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 ZFP90Q8TF47 636 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 RAB8BQ92930 207 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 CCT8L2Q96SF2 557 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 STACQ99469 402 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 BTBD2Q9BX70 525 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms