RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 KCTD7Q96MP8 289 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 TM7SF3Q9NS93 570 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 PPIEQ9UNP9 301 aaKnown RBP12.85□□□□□ -0.35
LDLR-201ENST00000252444 ZNF443Q9Y2A4 671 aaPredicted RBP12.85□□□□□ -0.35
LDLR-201ENST00000252444 SIP14410 1827 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 SCGNO76038 276 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 DCKP27707 260 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 MC3RP41968 323 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 ATP12AP54707 1039 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 OR2B6P58173 313 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 ZNF829Q3KNS6 432 aaPredicted RBP12.84□□□□□ -0.35
LDLR-201ENST00000252444 CYHR1Q6ZMK1 362 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 KRT77Q7Z794 578 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 FAM156AQ8NDB6 213 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 SLC25A43Q8WUT9 341 aaPredicted RBP12.84□□□□□ -0.35
LDLR-201ENST00000252444 GTF2H4Q92759 462 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 LCORQ96JN0 433 aaPredicted RBP12.84□□□□□ -0.35
LDLR-201ENST00000252444 OR7D2Q96RA2 312 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 ULBP3Q9BZM4 244 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 MCTS1Q9ULC4 181 aaKnown RBP12.84□□□□□ -0.35
LDLR-201ENST00000252444 TMEM221A6NGB7 291 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 ANXA2P2A6NMY6 339 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 M0R296 226 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 RTCAO00442 366 aaKnown RBP12.84□□□□□ -0.35
LDLR-201ENST00000252444 AHCYL1O43865 530 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 DNAJB6O75190 326 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 FESP07332 822 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 ANXA2P07355 339 aaKnown RBP12.84□□□□□ -0.35
LDLR-201ENST00000252444 HTR1AP08908 422 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 ITGB8P26012 769 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 FMO3P31513 532 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 RORCP51449 518 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 VBP1P61758 197 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 PCDH1Q08174 1060 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 CEACAM7Q14002 265 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 IL11RAQ14626 422 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 EXOC3L2Q2M3D2 409 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 CES4AQ5XG92 561 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 MARVELD2Q8N4S9 558 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 OR52R1Q8NGF1 315 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 TM4SF18Q96CE8 201 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 ZNF300Q96RE9 604 aaPredicted RBP12.84□□□□□ -0.35
LDLR-201ENST00000252444 KCNE1BA0A087WTH5 132 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 TBX10O75333 385 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 SLC5A2P31639 672 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 MAP2K6P52564 334 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 NXPH1P58417 271 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 ID2Q02363 134 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 C1orf189Q5VU69 101 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 TMEM225Q6GV28 225 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 ABI3BPQ7Z7G0 1075 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 PTRH1Q86Y79 214 aaKnown RBP12.84□□□□□ -0.35
LDLR-201ENST00000252444 C1orf210Q8IVY1 113 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 UEVLDQ8IX04 471 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 COX4I2Q96KJ9 171 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 PTTG2Q9NZH5 202 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 IGHV1OR15-9A0A0B4J2B8 117 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 TCRBV3S1A0A5B6 114 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 NME4O00746 187 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 IDH3BO43837 385 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 MSX2P35548 267 aaPredicted RBP12.84□□□□□ -0.35
LDLR-201ENST00000252444 ILKQ13418 452 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 ARL6IP1Q15041 203 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 ALG10BQ5I7T1 473 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 QSOX2Q6ZRP7 698 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 GPER1Q99527 375 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 GIMAP2Q9UG22 337 aa12.84□□□□□ -0.35
LDLR-201ENST00000252444 A0A1W2PQ72 361 aa12.83□□□□□ -0.35
LDLR-201ENST00000252444 ALOX12BO75342 701 aa12.83□□□□□ -0.35
LDLR-201ENST00000252444 RFPL3O75679 317 aa12.83□□□□□ -0.35
LDLR-201ENST00000252444 FOXK1P85037 733 aa12.83□□□□□ -0.35
LDLR-201ENST00000252444 DDI2Q5TDH0 399 aa12.83□□□□□ -0.35
LDLR-201ENST00000252444 DHRS4L2Q6PKH6 230 aa12.83□□□□□ -0.35
LDLR-201ENST00000252444 LRRN1Q6UXK5 716 aa12.83□□□□□ -0.35
LDLR-201ENST00000252444 ACOT11Q8WXI4 607 aaPredicted RBP12.83□□□□□ -0.35
LDLR-201ENST00000252444 SLC7A6OSQ96CW6 309 aaPredicted RBP12.83□□□□□ -0.35
LDLR-201ENST00000252444 PLA2G2FQ9BZM2 168 aa12.83□□□□□ -0.35
LDLR-201ENST00000252444 FAM117AQ9C073 453 aa12.83□□□□□ -0.35
LDLR-201ENST00000252444 NANSQ9NR45 359 aa12.83□□□□□ -0.35
LDLR-201ENST00000252444 CMTM6Q9NX76 183 aa12.83□□□□□ -0.35
LDLR-201ENST00000252444 BCL6P41182 706 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 YAP1P46937 504 aaKnown RBP12.83□□□□□ -0.36
LDLR-201ENST00000252444 PUM1Q14671 1186 aaKnown RBP eCLIP12.83□□□□□ -0.365e-6■■■□□ 14.8
LDLR-201ENST00000252444 MCFD2Q8NI22 146 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 THSD1Q9NS62 852 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 DDX28Q9NUL7 540 aaKnown RBP12.83□□□□□ -0.36
LDLR-201ENST00000252444 A0A1B0GVI7 797 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 PTHP01270 115 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 THBS1P07996 1170 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 MAP3K8P41279 467 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 RBM34P42696 430 aaKnown RBP12.83□□□□□ -0.36
LDLR-201ENST00000252444 FOXA1P55317 472 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 FAM69BQ5VUD6 431 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 RSBN1Q5VWQ0 802 aaPredicted RBP12.83□□□□□ -0.36
LDLR-201ENST00000252444 ALDH16A1Q8IZ83 802 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 CLECL1Q8IZS7 167 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 KCT2Q8NC54 265 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 COQ8BQ96D53 544 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 SLC39A3Q9BRY0 314 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 GPN1Q9HCN4 374 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms