RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 OPN1MWP04001 364 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 OPN1MW2P0DN77 364 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 OPN1MW3P0DN78 364 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 CYP11B1P15538 503 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 CCNCP24863 283 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 PTGER3P43115 390 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 ASMTP46597 345 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 VCPP55072 806 aaKnown RBP3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 KRTAP10-8P60410 259 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 NOP14P78316 857 aaKnown RBP3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 BNIP1Q12981 228 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 CD226Q15762 336 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 ZNF699Q32M78 642 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 STOX1Q6ZVD7 989 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 TMEM110Q86TL2 294 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 HIPK1Q86Z02 1210 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 CENPSQ8N2Z9 138 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 RNF148Q8N7C7 305 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 MNS1Q8NEH6 495 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 OR56B1Q8NGI3 324 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 OR52K2Q8NGK3 314 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 WDR36Q8NI36 951 aaKnown RBP3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 DQX1Q8TE96 717 aaKnown RBP3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 LHX4Q969G2 390 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 CCDC51Q96ER9 411 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 C14orf79Q96F83 325 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 FAM173AQ9BQD7 235 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 KRT23Q9C075 422 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 RAB17Q9H0T7 212 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 AMBNQ9NP70 447 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 ESM1Q9NQ30 184 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 SOHLH2Q9NX45 425 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 AIPL1Q9NZN9 384 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 ZNF490Q9ULM2 529 aaPredicted RBP3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 FZR1Q9UM11 496 aa3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 KLF2Q9Y5W3 355 aaPredicted RBP3.36□□□□□ -1.87
SMCHD1-213ENST00000609587 TRIM49BA6NDI0 452 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 TRABD2BA6NFA1 517 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 M0QX08 132 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 E2F3O00716 465 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 GPRIN2O60269 458 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 VENTXO95231 258 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 ARF4P18085 180 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 CCNA2P20248 432 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 RPA1P27694 616 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 PTPN4P29074 926 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 PBLDP30039 288 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 PRDX2P32119 198 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 ARHGDIAP52565 204 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 GMFBP60983 142 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 HAND2P61296 217 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 LMO4P61968 165 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 GABPB1Q06547 395 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 PDIA5Q14554 519 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 ZSWIM7Q19AV6 140 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 PARP6Q2NL67 630 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 LRIT3Q3SXY7 679 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 RABL6Q3YEC7 729 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 ACSF3Q4G176 576 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 CEP55Q53EZ4 464 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 EIPR1Q53HC9 387 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 CAVIN4Q5BKX8 364 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 LDLRAP1Q5SW96 308 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 TPGS2Q68CL5 300 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 ADAMTSL5Q6ZMM2 481 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 CEACAM19Q7Z692 300 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 DRAXINQ8NBI3 349 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 SUMF1Q8NBK3 374 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 ZBTB44Q8NCP5 570 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 CNNM3Q8NE01 707 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 OR4F17Q8NGA8 305 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 OR6T1Q8NGN1 323 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 OR52J3Q8NH60 311 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 ANKRD49Q8WVL7 239 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 DLX4Q92988 240 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 OR4F4Q96R69 305 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 KCNK16Q96T55 309 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 PAIP2Q9BPZ3 127 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 NMNAT2Q9BZQ4 307 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 NCOR1P1Q9H4R4 102 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 SUDS3Q9H7L9 328 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 ZNF581Q9P0T4 197 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 ARMCX1Q9P291 453 aa3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 PURGQ9UJV8 347 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-213ENST00000609587 LRIT2A6NDA9 550 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 H3BMH7 237 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 AP3B1O00203 1094 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 SNRPCP09234 159 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 BCL3P20749 454 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 RFC2P35250 354 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 HMGCLP35914 325 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 CAMLGP49069 296 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 RPL34P49207 117 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 SH3BGRP55822 239 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 DSCR10P59022 87 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 HERVK_113P63132 956 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 ERVK-8P63133 956 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 HTD2P86397 168 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 NAAAQ02083 359 aa3.34□□□□□ -1.87
SMCHD1-213ENST00000609587 ZNF85Q03923 595 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms