RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 L3MBTL1Q9Y468 752 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 ZNF780BQ9Y6R6 833 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 ABCA12Q86UK0 2595 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 KLF11O14901 512 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 SNNO75324 88 aaPredicted RBP11.44□□□□□ -0.58
UPF1-203ENST00000594504 ATP1B1P05026 303 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 FBXO45P0C2W1 286 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 CSNK2A2P19784 350 aaPredicted RBP11.44□□□□□ -0.58
UPF1-203ENST00000594504 DDCP20711 480 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 MAPK1P28482 360 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 FBXW4P57775 412 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 C2orf80Q0P641 193 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 DUSP8Q13202 625 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 EBPQ15125 230 aaKnown RBP11.44□□□□□ -0.58
UPF1-203ENST00000594504 PDCD2Q16342 344 aaPredicted RBP11.44□□□□□ -0.58
UPF1-203ENST00000594504 RFTN2Q52LD8 501 aaPredicted RBP11.44□□□□□ -0.58
UPF1-203ENST00000594504 C6orf163Q5TEZ5 329 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 FAM71E1Q6IPT2 247 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 GALNT12Q8IXK2 581 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 ULK2Q8IYT8 1036 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 LRRC25Q8N386 305 aaPredicted RBP11.44□□□□□ -0.58
UPF1-203ENST00000594504 NAXEQ8NCW5 288 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 TNIP2Q8NFZ5 429 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 CDC26Q8NHZ8 85 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 NEIL3Q8TAT5 605 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 C3orf30Q96M34 536 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 MANSC1Q9H8J5 431 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 CXorf21Q9HAI6 301 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 MIEF1Q9NQG6 463 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 CCM2LQ9NUG4 571 aaPredicted RBP11.44□□□□□ -0.58
UPF1-203ENST00000594504 GIMAP4Q9NUV9 329 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.44□□□□□ -0.58
UPF1-203ENST00000594504 ZNF446Q9NWS9 450 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 DNAJB12Q9NXW2 375 aaKnown RBP11.44□□□□□ -0.58
UPF1-203ENST00000594504 KIAA1549Q9HCM3 1950 aa11.44□□□□□ -0.58
UPF1-203ENST00000594504 C2orf92A0A1B0GVN3 265 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 PEX11AO75192 247 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 CTAG2O75638 210 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 TRAPPC6AO75865 159 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 GABRA1P14867 456 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 SDC1P18827 310 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 NT5EP21589 574 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 TACR1P25103 407 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 GDF1P27539 372 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 UQCRC1P31930 480 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 FEN1P39748 380 aaKnown RBP11.43□□□□□ -0.58
UPF1-203ENST00000594504 NTRK2Q16620 822 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 C6orf136Q5SQH8 315 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 RIPPLY2Q5TAB7 128 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 TMEM198Q66K66 360 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 DESI1Q6ICB0 168 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 PRR22Q8IZ63 422 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 LIX1Q8N485 282 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 ZNF441Q8N8Z8 693 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 RELL2Q8NC24 303 aaPredicted RBP11.43□□□□□ -0.58
UPF1-203ENST00000594504 DIO2Q92813 273 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 EXOSC8Q96B26 276 aaKnown RBP11.43□□□□□ -0.58
UPF1-203ENST00000594504 TUBGCP3Q96CW5 907 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 CNRIP1Q96F85 164 aaPredicted RBP11.43□□□□□ -0.58
UPF1-203ENST00000594504 ZNF764Q96H86 408 aaPredicted RBP11.43□□□□□ -0.58
UPF1-203ENST00000594504 ZNF681Q96N22 645 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 TIMP4Q99727 224 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 GPATCH1Q9BRR8 931 aaKnown RBP11.43□□□□□ -0.58
UPF1-203ENST00000594504 DOHHQ9BU89 302 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 POLDIP3Q9BY77 421 aaKnown RBP11.43□□□□□ -0.58
UPF1-203ENST00000594504 ACKR4Q9NPB9 350 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 SLC35C2Q9NQQ7 365 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 TAS2R7Q9NYW3 318 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 CNIH4Q9P003 139 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 SLC6A5Q9Y345 797 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 OTOGQ6ZRI0 2925 aa11.43□□□□□ -0.58
UPF1-203ENST00000594504 C15orf38-AP3S2A0A0A6YYH1 394 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 OR6C76A6NM76 312 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 TRIM3O75382 744 aaPredicted RBP11.42□□□□□ -0.58
UPF1-203ENST00000594504 JUNP05412 331 aaKnown RBP11.42□□□□□ -0.58
UPF1-203ENST00000594504 BCKDHAP12694 445 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 CD1EP15812 388 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 BMP5P22003 454 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 MPIP34949 423 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 KIR2DL3P43628 341 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 ASMTP46597 345 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 AGFG1P52594 562 aaKnown RBP11.42□□□□□ -0.58
UPF1-203ENST00000594504 PPP2R2AP63151 447 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 OCRLQ01968 901 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 FUT7Q11130 342 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 MAD2L1Q13257 205 aaPredicted RBP11.42□□□□□ -0.58
UPF1-203ENST00000594504 CEBPEQ15744 281 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 SMU1Q2TAY7 513 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 SLC25A35Q3KQZ1 300 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 FNDC7Q5VTL7 733 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 VWA5B2Q8N398 1253 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 FNDC5Q8NAU1 212 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 OR7G1Q8NGA0 311 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 SPPL2AQ8TCT8 520 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 ZNF75CPQ92670 426 aaPredicted RBP11.42□□□□□ -0.58
UPF1-203ENST00000594504 EGLN2Q96KS0 407 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 GNRHR2Q96P88 292 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 TSSK3Q96PN8 268 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 OR10A5Q9H207 317 aa11.42□□□□□ -0.58
UPF1-203ENST00000594504 PNPOQ9NVS9 261 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms