RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 B3GALT6Q96L58 329 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 ZIM3Q96PE6 472 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 NDUFAF3Q9BU61 184 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 HCAR1Q9BXC0 346 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 SIRPDQ9H106 197 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 RSPH9Q9H1X1 276 aaPredicted RBP3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 IKZF5Q9H5V7 419 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 KCNN3Q9UGI6 736 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 FETUBQ9UGM5 382 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 DNPEPQ9ULA0 475 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 DHRS7Q9Y394 339 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 ABCA7Q8IZY2 2146 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 RPGRIP1LQ68CZ1 1315 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 FRG2CA6NGY1 282 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 SLC9B1P1A6NJY1 282 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 H3BMH7 237 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 CYP11B1P15538 503 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 ZNF19P17023 458 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 RFC2P35250 354 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 SLC6A8P48029 635 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 ALDH3B2P48448 385 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 NUMBP49757 651 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 ERVPABLB-1P60509 514 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 PARP6Q2NL67 630 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 SLC22A10Q63ZE4 541 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 RABEPKQ7Z6M1 372 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 TAF8Q7Z7C8 310 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 ADGRD2Q7Z7M1 963 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 PRR22Q8IZ63 422 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 CCDC26Q8TAB7 109 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 FAF2Q96CS3 445 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 VSIG2Q96IQ7 327 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 TEX13BQ9BXU2 312 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 ELOVL4Q9GZR5 314 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 THAP9Q9H5L6 903 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 FAM114A2Q9NRY5 505 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 DPM3Q9P2X0 92 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 MBD2Q9UBB5 411 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 FZR1Q9UM11 496 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 BARX2Q9UMQ3 279 aaPredicted RBP3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 MOKQ9UQ07 419 aa3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 RPH3AQ9Y2J0 694 aaPredicted RBP3.28□□□□□ -1.88
SMCHD1-204ENST00000581226 TRIM64A6NGJ6 449 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 TRIM64BA6NI03 449 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 SLC17A2O00624 439 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 H2AFZP0C0S5 128 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 VDRP11473 427 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 AHCYP23526 432 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 IL2RGP31785 369 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 RGRP47804 291 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 MYBPC1Q00872 1141 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 SRYQ05066 204 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 RAB35Q15286 201 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 ZNF79Q15937 498 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 ACSF3Q4G176 576 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 BEND6Q5SZJ8 279 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 MIER3Q7Z3K6 550 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 VASH2Q86V25 355 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 APOBEC3FQ8IUX4 373 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 UBQLNLQ8IYU4 475 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 GPR137CQ8N3F9 429 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 OR52E1Q8NGJ3 308 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 WDR36Q8NI36 951 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 MGARPQ8TDB4 240 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 U2AF1L4Q8WU68 220 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 C11orf24Q96F05 449 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 PHYHIPLQ96FC7 376 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 CARD6Q9BX69 1037 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 OPN3Q9H1Y3 402 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 SYTL2Q9HCH5 934 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 MIEF1Q9NQG6 463 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 ABCB10Q9NRK6 738 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 DCAF13Q9NV06 445 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 IL17CQ9P0M4 197 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 SLC2A6Q9UGQ3 507 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 BCAP29Q9UHQ4 241 aa3.27□□□□□ -1.89
SMCHD1-204ENST00000581226 TRBV7-9A0A0J9YWB2 115 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 ARHGAP42A6NI28 874 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 HTATSF1O43719 755 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 BCAS2O75934 225 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 SLC4A1P02730 911 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 CXCL10P02778 98 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 P0C879 139 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 SDC1P18827 310 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 ACVR1BP36896 505 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 STK19P49842 368 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 HERVK_113P63132 956 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 ERVK-8P63133 956 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 IL9RQ01113 521 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 PUDPQ08623 228 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 IL18R1Q13478 541 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 LGSNQ5TDP6 509 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 ZNF658Q5TYW1 1059 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 IL23RQ5VWK5 629 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 MEDAGQ5VYS4 303 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 WDR88Q6ZMY6 472 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 P4HA3Q7Z4N8 544 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 FBXO16Q8IX29 292 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 MCOLN2Q8IZK6 566 aa3.26□□□□□ -1.89
SMCHD1-204ENST00000581226 RUFY1Q96T51 708 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms