RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TCTE3Q8IZS6 198 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 SETD7Q8WTS6 366 aaKnown RBP12.42□□□□□ -0.42
CLN3-210ENST00000563874 TRIM63Q969Q1 353 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 AIF1LQ9BQI0 150 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 DPH7Q9BTV6 452 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 ZCCHC2Q9C0B9 1178 aaKnown RBP12.42□□□□□ -0.42
CLN3-210ENST00000563874 XIRP2A4UGR9 3374 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 GABRPO00591 440 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 HRO43593 1189 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 LCMT2O60294 686 aaKnown RBP12.41□□□□□ -0.42
CLN3-210ENST00000563874 UBXN7O94888 489 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 SLC2A10O95528 541 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 CXCL10P02778 98 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 C6P13671 934 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 EVX1P49640 407 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 RAB8AP61006 207 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 CSTF1Q05048 431 aaKnown RBP12.41□□□□□ -0.42
CLN3-210ENST00000563874 ENTPD8Q5MY95 495 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 SLC25A30Q5SVS4 291 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 MZT2BQ6NZ67 158 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 IL20RBQ6UXL0 311 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 ASB18Q6ZVZ8 466 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 KREMEN2Q8NCW0 462 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 KIAA1143Q96AT1 154 aaPredicted RBP12.41□□□□□ -0.42
CLN3-210ENST00000563874 PRRC1Q96M27 445 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 AMDHD1Q96NU7 426 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 OR52A5Q9H2C5 316 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 FGF20Q9NP95 211 aaPredicted RBP12.41□□□□□ -0.42
CLN3-210ENST00000563874 TCF20Q9UGU0 1960 aaKnown RBP12.41□□□□□ -0.42
CLN3-210ENST00000563874 CXorf51AA0A1B0GTR3 108 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 KIAA0355O15063 1070 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 NDUFS4O43181 175 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 HCN1O60741 890 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 HMGN2P05204 90 aaKnown RBP12.41□□□□□ -0.42
CLN3-210ENST00000563874 NDUFA9Q16795 377 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 MINDY4Q4G0A6 757 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 PIP5KL1Q5T9C9 394 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 CD300LDQ6UXZ3 194 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 PLA2G15Q8NCC3 412 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 QRFPRQ96P65 431 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 TRMT61BQ9BVS5 477 aaKnown RBP12.41□□□□□ -0.42
CLN3-210ENST00000563874 GON7Q9BXV9 100 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 EPHX3Q9H6B9 360 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 ZDHHC4Q9NPG8 344 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 MTCL1Q9Y4B5 1905 aaKnown RBP12.41□□□□□ -0.42
CLN3-210ENST00000563874 GSAPA4D1B5 854 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 FAM183AA6NL82 134 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 ARHGEF9O43307 516 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 PLOD3O60568 738 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 OR2B3O76000 313 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 PAPLNO95428 1278 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 ARSBP15848 533 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 TRIM23P36406 574 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 SSR2P43308 183 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 GPR4P46093 362 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 ABATP80404 500 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 CEP78Q5JTW2 689 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 KLBQ86Z14 1044 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 CCDC116Q8IYX3 515 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 OR4M1Q8NGD0 313 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 OR2L2Q8NH16 312 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 SPRYD4Q8WW59 207 aaPredicted RBP12.41□□□□□ -0.42
CLN3-210ENST00000563874 SLC38A2Q96QD8 506 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 BBS4Q96RK4 519 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 TMEM43Q9BTV4 400 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 RNF32Q9H0A6 362 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 HDHD2Q9H0R4 259 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 KLHL21Q9UJP4 597 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 CSNK1G3Q9Y6M4 447 aa12.41□□□□□ -0.42
CLN3-210ENST00000563874 FAM157BP0CG42 384 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 SDHBP21912 280 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 KELP23276 732 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 FGF9P31371 208 aaPredicted RBP12.4□□□□□ -0.42
CLN3-210ENST00000563874 AGFG1P52594 562 aaKnown RBP12.4□□□□□ -0.42
CLN3-210ENST00000563874 NTHL1P78549 312 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 NUMA1Q14980 2115 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 RFPL4BQ6ZWI9 263 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 RRM2BQ7LG56 351 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 VRK2Q86Y07 508 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 C7orf57Q8NEG2 295 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 OR4M2Q8NGB6 313 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 ZFPM2Q8WW38 1151 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 TBX5Q99593 518 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 SEMA4GQ9NTN9 838 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 ING3Q9NXR8 418 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 EXOSC1Q9Y3B2 195 aaKnown RBP12.4□□□□□ -0.42
CLN3-210ENST00000563874 TRDV1A0A1B0GX56 115 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 SNTNA6NMZ2 147 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 C12orf71A8MTZ7 269 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 PGRMC2O15173 223 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 FRKP42685 505 aaPredicted RBP12.4□□□□□ -0.42
CLN3-210ENST00000563874 CCR8P51685 355 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 P2RX3P56373 397 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 DUSP2Q05923 314 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 ZNF155Q12901 538 aaPredicted RBP12.4□□□□□ -0.42
CLN3-210ENST00000563874 IDNKQ5T6J7 187 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 LAMTOR1Q6IAA8 161 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 CD200R1LQ6Q8B3 271 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 TMEM107Q6UX40 140 aa12.4□□□□□ -0.42
CLN3-210ENST00000563874 ZNF793Q6ZN11 406 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms