RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 FAM209AQ5JX71 171 aa15.33■□□□□ 0.04
SHMT2-232ENST00000557487 SIGIRRQ6IA17 410 aa15.33■□□□□ 0.04
SHMT2-232ENST00000557487 PAMR1Q6UXH9 720 aa15.33■□□□□ 0.04
SHMT2-232ENST00000557487 KIF18BQ86Y91 864 aa15.33■□□□□ 0.04
SHMT2-232ENST00000557487 MARCH9Q86YJ5 346 aa15.33■□□□□ 0.04
SHMT2-232ENST00000557487 GHDCQ8N2G8 530 aa15.33■□□□□ 0.04
SHMT2-232ENST00000557487 XAGE5Q8WWM1 108 aa15.33■□□□□ 0.04
SHMT2-232ENST00000557487 EXOSC8Q96B26 276 aaKnown RBP15.33■□□□□ 0.04
SHMT2-232ENST00000557487 UPRTQ96BW1 309 aa15.33■□□□□ 0.04
SHMT2-232ENST00000557487 NLKQ9UBE8 527 aa15.33■□□□□ 0.04
SHMT2-232ENST00000557487 SATB2Q9UPW6 733 aa15.33■□□□□ 0.04
SHMT2-232ENST00000557487 A0A1W2PRU2 124 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 GABRPO00591 440 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 TEX28O15482 410 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 POP7O75817 140 aaKnown RBP15.32■□□□□ 0.04
SHMT2-232ENST00000557487 TBX6O95947 436 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-232ENST00000557487 TYRP14679 529 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 SLC6A11P48066 632 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 MTNR1BP49286 362 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 ARFIP1P53367 373 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 GET4Q7L5D6 327 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-232ENST00000557487 TOR1AIP2Q8NFQ8 470 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 OR6T1Q8NGN1 323 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 SUN5Q8TC36 379 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 F2RL3Q96RI0 385 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 GPA33Q99795 319 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 WFDC6Q9BQY6 131 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 FAIM2Q9BWQ8 316 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 OR2AG1Q9H205 316 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 RERGLQ9H628 205 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 DDX31Q9H8H2 851 aaKnown RBP15.32■□□□□ 0.04
SHMT2-232ENST00000557487 B3GAT2Q9NPZ5 323 aa15.32■□□□□ 0.04
SHMT2-232ENST00000557487 A0A0G2JMP0 313 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 PRAMEF27A3QJZ7 478 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 WASHC1A8K0Z3 465 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 CEP290O15078 2479 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 NOS1APO75052 506 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-232ENST00000557487 CD53P19397 219 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 NTSP30990 170 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 RNF144AP50876 292 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-232ENST00000557487 DPTQ07507 201 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 IKZF1Q13422 519 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 AADACL4Q5VUY2 407 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 DEFB128Q7Z7B8 93 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 CCDC28AQ8IWP9 274 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 UBE2J2Q8N2K1 259 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 PIGXQ8TBF5 258 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 PLA2G12AQ9BZM1 189 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 PIGUQ9H490 435 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 SPHK2Q9NRA0 654 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 TRPC4Q9UBN4 977 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 ASF1AQ9Y294 204 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 CLCA3PQ9Y6N3 262 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 NUP210Q8TEM1 1887 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-232ENST00000557487 A0A087WUU8 490 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 FAM170BA6NMN3 283 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 NDUFS4O43181 175 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 PAPLNO95428 1278 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 FGF19O95750 216 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 HTR1FP30939 366 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 ST3GAL3Q11203 375 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 P2RY14Q15391 338 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 HSD17B12Q53GQ0 312 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 ESCO2Q56NI9 601 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 LRRC28Q86X40 367 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-232ENST00000557487 AMDHD1Q96NU7 426 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 OR52A5Q9H2C5 316 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 MTIF3Q9H2K0 278 aaKnown RBP15.31■□□□□ 0.04
SHMT2-232ENST00000557487 ZCCHC3Q9NUD5 404 aaKnown RBP15.31■□□□□ 0.04
SHMT2-232ENST00000557487 MCUBQ9NWR8 336 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 CALML5Q9NZT1 146 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 KLF15Q9UIH9 416 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 SLC13A4Q9UKG4 626 aa15.31■□□□□ 0.04
SHMT2-232ENST00000557487 TET1Q8NFU7 2136 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 LILRB3O75022 631 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 HMGN1P05114 100 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 FPR3P25089 353 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 SLC6A1P30531 599 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 TALDO1P37837 337 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 GPR1P46091 355 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 TAS2R41P59536 307 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 SHC2P98077 582 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 ZNF155Q12901 538 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-232ENST00000557487 CNKSR3Q6P9H4 555 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.3■□□□□ 0.044e-7■□□□□ 9.3
SHMT2-232ENST00000557487 PARS2Q7L3T8 475 aaKnown RBP15.3■□□□□ 0.04
SHMT2-232ENST00000557487 RRM2BQ7LG56 351 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 ANKRD53Q8N9V6 530 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 SLC37A3Q8NCC5 494 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 VN1R2Q8NFZ6 395 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 OR56A1Q8NGH5 318 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 CXorf40AQ8TE69 158 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 NUS1Q96E22 293 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 OTUB1Q96FW1 271 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-232ENST00000557487 ARHGDIGQ99819 225 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 ABCG4Q9H172 646 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 EGLN3Q9H6Z9 239 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 WDR70Q9NW82 654 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 MARK1Q9P0L2 795 aa15.3■□□□□ 0.04
SHMT2-232ENST00000557487 ING4Q9UNL4 249 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms