RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 CEACAM7Q14002 265 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 SMC1AQ14683 1233 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 RPS6KA1Q15418 735 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 STXBP2Q15833 593 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CDC37Q16543 378 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 C2orf76Q3KRA6 126 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 IFI44LQ53G44 452 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 SPANXN4Q5MJ08 99 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 PRAMEF8Q5VWM4 474 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CES4AQ5XG92 561 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 KCTD11Q693B1 232 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 FRRS1Q6ZNA5 592 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 C17orf107Q6ZR85 190 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 RFPL4BQ6ZWI9 263 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 PRSS42Q7Z5A4 293 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CATSPERDQ86XM0 798 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CACUL1Q86Y37 369 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 TMEM126BQ8IUX1 230 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 LAX1Q8IWV1 398 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 SLC22A15Q8IZD6 547 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 THEM5Q8N1Q8 247 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 LRRC43Q8N309 656 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CARNMT1Q8N4J0 409 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 METTL13Q8N6R0 699 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 NAT8LQ8N9F0 302 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 LPCAT1Q8NF37 534 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 NUP37Q8NFH4 326 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 OR13C5Q8NGS8 318 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 PPTC7Q8NI37 304 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF519Q8TB69 540 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ITFG1Q8TB96 612 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 RLN3Q8WXF3 142 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 GGHQ92820 318 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 BCL2L2Q92843 193 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 FGF13Q92913 245 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ULK4Q96C45 1275 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 BPIFA2Q96DR5 249 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 C5orf30Q96GV9 206 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 PDLIM5Q96HC4 596 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CABS1Q96KC9 395 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 LINC00479Q96M42 142 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 OPRPNQ99935 248 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 UBAC1Q9BSL1 405 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 PAPOLGQ9BWT3 736 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 MRPL9Q9BYD2 267 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CLMPQ9H6B4 373 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CWH43Q9H720 699 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 VIPAS39Q9H9C1 493 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 C3orf14Q9HBI5 128 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 MID1IP1Q9NPA3 183 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 PNPLA3Q9NST1 481 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ZDHHC18Q9NUE0 388 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 LNPEPQ9UIQ6 1025 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 FBXW2Q9UKT8 454 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 Q9Y3F1 56 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 WIPI2Q9Y4P8 454 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 TDRD6O60522 2096 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 MTORP42345 2549 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 TLN1Q9Y490 2541 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF469Q96JG9 3925 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 VPS13CQ709C8 3753 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 IQCMA0A1B0GVH7 501 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 GTPBP10A4D1E9 387 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 TRIM64A6NGJ6 449 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 TRIM64BA6NI03 449 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 MPTX1A8MV57 137 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 KPNA7A9QM74 516 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 LMO7DNF2Z398 122 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 HAS3O00219 553 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 GPAA1O43292 621 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 LRCH4O75427 683 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 BAG2O95816 211 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 GAS8O95995 478 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 PNPP00491 289 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 RPLP0P05388 317 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ZSCAN5DPP0CG00 497 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 GPR183P32249 361 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 FEN1P39748 380 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 OR1G1P47890 313 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CXCL12P48061 93 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 DHPSP49366 369 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ATXN3P54252 364 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ADARP55265 1226 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 TMEM50BP56557 158 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 IRX1P78414 480 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 MRPS6P82932 125 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 DHODHQ02127 395 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 UBXN1Q04323 297 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ACTN3Q08043 901 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 NPRL3Q12980 569 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 RPA4Q13156 261 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 PPP2R5CQ13362 524 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 GPR50Q13585 617 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 NUMA1Q14980 2115 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 PON2Q15165 354 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 FAM189A2Q15884 450 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CLLU1OSQ5K130 101 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ZC2HC1BQ5TFG8 222 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF776Q68DI1 518 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 TRIM65Q6PJ69 517 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms