RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 MAGEB17A8MXT2 336 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 INMT-MINDY4F8WBC2 141 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 SGK494L7N484 410 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 MANBAO00462 879 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 CLDN5O00501 218 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 FPGTO14772 594 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 LYRM1O43325 122 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 TSC22D2O75157 780 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 CLDN9O95484 217 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 PTHP01270 115 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 IGLV3-25P01717 112 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 RAF1P04049 648 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 DNTTP04053 509 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 SRPRAP08240 638 aaKnown RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 NR2F6P10588 404 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 BCKDHAP12694 445 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 PRKACAP17612 351 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 GPX2P18283 190 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 LHCGRP22888 699 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 RPS3P23396 243 aaKnown RBP eCLIP6.21□□□□□ -1.42
USP28-202ENST00000535607 PRPH2P23942 346 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 CHMP24386 653 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 ITGB8P26012 769 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 C21orf33P30042 268 aaPredicted RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 TGFBR1P36897 503 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 ASMTP46597 345 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 CCT3P49368 545 aaKnown RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 GZMMP51124 257 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 SOX8P57073 446 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 WDR5P61964 334 aaKnown RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 SNRPGP62308 76 aaKnown RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 PLIN5Q00G26 463 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 RBBP4Q09028 425 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 ELAVL2Q12926 359 aaKnown RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 KCNC3Q14003 757 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 ABRAXAS2Q15018 415 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 UPP1Q16831 310 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 HKDC1Q2TB90 917 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 USP39Q53GS9 565 aaKnown RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 CLLU1OSQ5K130 101 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 MANEALQ5VSG8 457 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 SAXO2Q658L1 398 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 RAP1GAP2Q684P5 730 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 OR4F3Q6IEY1 312 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 ANKRD54Q6NXT1 300 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 ARSKQ6UWY0 536 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 CASP12Q6UXS9 341 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 IKBIPQ70UQ0 350 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 RRM2BQ7LG56 351 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 GLT6D1Q7Z4J2 308 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 PRSS42Q7Z5A4 293 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 DEFB128Q7Z7B8 93 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 ASPGQ86U10 573 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 LDB1Q86U70 411 aaPredicted RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 COMMD7Q86VX2 200 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 SLC22A15Q8IZD6 547 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 SLC34A3Q8N130 599 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 THEM5Q8N1Q8 247 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 LINC00471Q8N535 108 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 C11orf65Q8NCR3 313 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 PROKR2Q8NFJ6 384 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 OR5T2Q8NGG2 359 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 OR52N2Q8NGI0 321 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 OR10Z1Q8NGY1 313 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 PHOSPHO2Q8TCD6 241 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 SPPL2AQ8TCT8 520 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 CREB3L4Q8TEY5 395 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 NDRG1Q92597 394 aaKnown RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 PHF21AQ96BD5 680 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 TADA1Q96BN2 335 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 COQ8BQ96D53 544 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 REPS1Q96D71 796 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 CHFRQ96EP1 664 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 OTUB1Q96FW1 271 aaPredicted RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 TPD52L3Q96J77 140 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 QRFPRQ96P65 431 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 PSKH2Q96QS6 385 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 PANX1Q96RD7 426 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 EGFL8Q99944 293 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 PELOQ9BRX2 385 aaKnown RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 TMEM175Q9BSA9 504 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 LRFN3Q9BTN0 628 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 NDC1Q9BTX1 674 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 C1orf43Q9BWL3 253 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 TAPBPLQ9BX59 468 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 TEX12Q9BXU0 123 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 PRRG3Q9BZD7 231 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 ACTL8Q9H568 366 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 ELOVL6Q9H5J4 265 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 CSNK1G1Q9HCP0 422 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 THSD1Q9NS62 852 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 TMEM248Q9NWD8 314 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 NDUFB11Q9NX14 153 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 MIOSQ9NXC5 875 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 VNN3Q9NY84 501 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 SLC25A37Q9NYZ2 338 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 WWOXQ9NZC7 414 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 SLC23A1Q9UHI7 598 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 ELF5Q9UKW6 265 aaPredicted RBP6.21□□□□□ -1.42
USP28-202ENST00000535607 TMCC3Q9ULS5 477 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms