RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 NUDCD3Q8IVD9 361 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 OR6Y1Q8NGX8 325 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 PPP1R14CQ8TAE6 165 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 TMBIM1Q969X1 311 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 PPCDCQ96CD2 204 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 ZBED6CLQ96FA7 236 aaPredicted RBP18.87■□□□□ 0.61
VPS28-206ENST00000526734 EGLN2Q96KS0 407 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 GLIPR2Q9H4G4 154 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 KLRF1Q9NZS2 232 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 HRH3Q9Y5N1 445 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 SNPHO15079 494 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 BIRC5O15392 142 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 PSMG1O95456 288 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 CREB1P16220 341 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 IL12BP29460 328 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 GCKP35557 465 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 SERPINB4P48594 390 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 PNLIPRP2P54317 469 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 PDE7AQ13946 482 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 SF3B4Q15427 424 aaKnown RBP eCLIP18.86■□□□□ 0.617e-8■■■■□ 26.4
VPS28-206ENST00000526734 CYP27C1Q4G0S4 372 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 RFTN2Q52LD8 501 aaPredicted RBP18.86■□□□□ 0.61
VPS28-206ENST00000526734 FNDC7Q5VTL7 733 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 BICRALQ6AI39 1079 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 ZNF585AQ6P3V2 769 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 NCCRP1Q6ZVX7 275 aaPredicted RBP18.86■□□□□ 0.61
VPS28-206ENST00000526734 MARVELD2Q8N4S9 558 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 OR5M9Q8NGP3 310 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 OR1J4Q8NGS1 313 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 MARVELD3Q96A59 401 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 ELP4Q96EB1 424 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 ZIM3Q96PE6 472 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 NODALQ96S42 347 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 SLC6A15Q9H2J7 730 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 ACSS1Q9NUB1 689 aaPredicted RBP18.86■□□□□ 0.61
VPS28-206ENST00000526734 MRTO4Q9UKD2 239 aaKnown RBP18.86■□□□□ 0.61
VPS28-206ENST00000526734 OR10H1Q9Y4A9 318 aa18.86■□□□□ 0.61
VPS28-206ENST00000526734 TMEM233B4DJY2 109 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 TSPAN2O60636 221 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 ICOSLGO75144 302 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 ENDOUP21128 410 aaKnown RBP18.85■□□□□ 0.61
VPS28-206ENST00000526734 PTPN6P29350 595 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 CORO7P57737 925 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 GALNTL6Q49A17 601 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 ATP6AP1LQ52LC2 224 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 CEP85LQ5SZL2 805 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 C1orf185Q5T7R7 199 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 TMEM107Q6UX40 140 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 ANGPTL8Q6UXH0 198 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 NPSR1Q6W5P4 371 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 LARP4Q71RC2 724 aaKnown RBP eCLIP18.85■□□□□ 0.61
VPS28-206ENST00000526734 SLC44A2Q8IWA5 706 aaPredicted RBP18.85■□□□□ 0.61
VPS28-206ENST00000526734 PM20D2Q8IYS1 436 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 PGM2Q96G03 612 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 TSSK3Q96PN8 268 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 ANKRA2Q9H9E1 313 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 Q9N2J8 555 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 SPRR3Q9UBC9 169 aa18.85■□□□□ 0.61
VPS28-206ENST00000526734 ZNF407Q9C0G0 2248 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 UPK1AO00322 258 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 CBR3O75828 277 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 TRAPPC6AO75865 159 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 ZWINTO95229 277 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 SERPINE1P05121 402 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 BCKDHAP12694 445 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 COX6B1P14854 86 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 GRNP28799 593 aaKnown RBP18.84■□□□□ 0.61
VPS28-206ENST00000526734 HPCAL1P37235 193 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 FRKP42685 505 aaPredicted RBP18.84■□□□□ 0.61
VPS28-206ENST00000526734 PSMD4P55036 377 aaKnown RBP18.84■□□□□ 0.61
VPS28-206ENST00000526734 PSG6Q00889 435 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 PRSS53Q2L4Q9 553 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 TNFAIP8L3Q5GJ75 292 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 NHSL2Q5HYW2 709 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 EXOC3L1Q86VI1 746 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 NATD1Q8N6N6 113 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 RNF138Q8WVD3 245 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 GNRHR2Q96P88 292 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 ADOQ96SZ5 270 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 TTYH2Q9BSA4 534 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 C3orf14Q9HBI5 128 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 RNF6Q9Y252 685 aa18.84■□□□□ 0.61
VPS28-206ENST00000526734 EXPH5Q8NEV8 1989 aa18.83■□□□□ 0.61
VPS28-206ENST00000526734 C15orf38-AP3S2A0A0A6YYH1 394 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 AHRRA9YTQ3 701 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 GNB5O14775 395 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 ERLIN1O75477 346 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 LYPLA1O75608 230 aaPredicted RBP18.83■□□□□ 0.6
VPS28-206ENST00000526734 HSPA4LO95757 839 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 PRPS2P11908 318 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 GRK2P25098 689 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 GPC1P35052 558 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 PTGDSP41222 190 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 TRPC1P48995 793 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 NUP107P57740 925 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 PMPCAQ10713 525 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 MAD2L1Q13257 205 aaPredicted RBP18.83■□□□□ 0.6
VPS28-206ENST00000526734 VPS26BQ4G0F5 336 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 LILRB4Q8NHJ6 448 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 CEP70Q8NHQ1 597 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms