RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 NR2C2APQ86WQ0 139 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 TBC1D21Q8IYX1 336 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 CNRIP1Q96F85 164 aaPredicted RBP6.29□□□□□ -1.4
LSM1-202ENST00000520286 LRR1Q96L50 414 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 OVOL2Q9BRP0 275 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 TPPP3Q9BW30 176 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 PALMDQ9NP74 551 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 SPHK2Q9NRA0 654 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.29□□□□□ -1.4
LSM1-202ENST00000520286 P2RX2Q9UBL9 471 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 MRPS28Q9Y2Q9 187 aaKnown RBP6.29□□□□□ -1.4
LSM1-202ENST00000520286 QRICH2Q9H0J4 1663 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 ELP1O95163 1332 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 NSD3Q9BZ95 1437 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 LOC390937A0A1W2PQ73 354 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 MEIOCA2RUB1 952 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 EME2A4GXA9 379 aaPredicted RBP6.28□□□□□ -1.4
LSM1-202ENST00000520286 BUB1O43683 1085 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 TSPAN2O60636 221 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 PCCBP05166 539 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 CA3P07451 260 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 PNMA6AP0CW24 399 aaPredicted RBP6.28□□□□□ -1.4
LSM1-202ENST00000520286 TNNI3P19429 210 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 IFNAR2P48551 515 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 UBE2HP62256 183 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 ITPK1Q13572 414 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 SLC17A1Q14916 467 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 TMEM41BQ5BJD5 291 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 WLSQ5T9L3 541 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 DPY19L2P2Q6ZN68 376 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 ERASQ7Z444 233 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 PPP1R42Q7Z4L9 355 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 PLA2G4DQ86XP0 818 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 TBC1D10CQ8IV04 446 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 CCDC51Q96ER9 411 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 WRAP53Q9BUR4 548 aaKnown RBP6.28□□□□□ -1.4
LSM1-202ENST00000520286 RAB11FIP5Q9BXF6 653 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 KRTAP4-11Q9BYQ6 195 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 DCTPP1Q9H773 170 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 MED20Q9H944 212 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 NMUR1Q9HB89 426 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 B3GAT2Q9NPZ5 323 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 FOXJ3Q9UPW0 622 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 CHMP2BQ9UQN3 213 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 V9GYY5 206 aaPredicted RBP6.28□□□□□ -1.4
LSM1-202ENST00000520286 ITSN1Q15811 1721 aa6.28□□□□□ -1.4
LSM1-202ENST00000520286 AKAP12Q02952 1782 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 A0A1B0GUL7 405 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 K7EQD1 137 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 KIF2AO00139 706 aaPredicted RBP6.27□□□□□ -1.41
LSM1-202ENST00000520286 NEMFO60524 1076 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 IDH1O75874 414 aaKnown RBP6.27□□□□□ -1.41
LSM1-202ENST00000520286 HPRP00739 348 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 AMBPP02760 352 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 PRKACGP22612 351 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 PTPN6P29350 595 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 FCGR2BP31994 310 aaPredicted RBP6.27□□□□□ -1.41
LSM1-202ENST00000520286 ADRA1AP35348 466 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 SOX6P35712 828 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 GSCP56915 257 aaPredicted RBP6.27□□□□□ -1.41
LSM1-202ENST00000520286 TPM4P67936 248 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 CYCSP99999 105 aaKnown RBP6.27□□□□□ -1.41
LSM1-202ENST00000520286 HKDC1Q2TB90 917 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 LRIT3Q3SXY7 679 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 ZSCAN25Q6NSZ9 544 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 SYT10Q6XYQ8 523 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 FRRS1Q6ZNA5 592 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 GPR142Q7Z601 462 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 CUZD1Q86UP6 607 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 BANPQ8N9N5 519 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 C9orf106Q8NAJ2 232 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 ICA1LQ8NDH6 482 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 DENND6BQ8NEG7 585 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 FAM76AQ8TAV0 307 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 RBM18Q96H35 190 aaKnown RBP6.27□□□□□ -1.41
LSM1-202ENST00000520286 GPA33Q99795 319 aa6.27□□□□□ -1.41
LSM1-202ENST00000520286 N4BP2Q86UW6 1770 aaPredicted RBP6.26□□□□□ -1.41
LSM1-202ENST00000520286 NEDD8-MDP1E9PL57 170 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 KRT8P05787 483 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 CCDC172P0C7W6 258 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 AOC1P19801 751 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 PDHA2P29803 388 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 RPL9P32969 192 aaKnown RBP6.26□□□□□ -1.41
LSM1-202ENST00000520286 MLF2Q15773 248 aaPredicted RBP6.26□□□□□ -1.41
LSM1-202ENST00000520286 KIF6Q6ZMV9 814 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 GPBP1Q86WP2 473 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 CENPLQ8N0S6 344 aaPredicted RBP6.26□□□□□ -1.41
LSM1-202ENST00000520286 OR10G7Q8NGN6 311 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 OR10T2Q8NGX3 314 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 WDR36Q8NI36 951 aaKnown RBP6.26□□□□□ -1.41
LSM1-202ENST00000520286 ZNF519Q8TB69 540 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 GIPC3Q8TF64 312 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 SLCO2A1Q92959 643 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 ALKBH3Q96Q83 286 aaPredicted RBP6.26□□□□□ -1.41
LSM1-202ENST00000520286 USP28Q96RU2 1077 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 PROCRQ9UNN8 238 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 CNTNAP1P78357 1384 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 PIK3C2AO00443 1686 aa6.26□□□□□ -1.41
LSM1-202ENST00000520286 MAP3K19Q56UN5 1328 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 E9PMD0 336 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms