RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 GPC4O75487 556 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 TSPAN12O95859 305 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 MT-CYBP00156 380 aaPredicted RBP3.61□□□□□ -1.83
USP54-217ENST00000498213 NGFRP08138 427 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 FGF2P09038 288 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 CD48P09326 243 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 FAM228BP0C875 321 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 EZRP15311 586 aaKnown RBP3.61□□□□□ -1.83
USP54-217ENST00000498213 UGT2B7P16662 529 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 UGT1A1P22309 533 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 RPS3P23396 243 aaKnown RBP eCLIP3.61□□□□□ -1.83
USP54-217ENST00000498213 HPDP32754 393 aaPredicted RBP3.61□□□□□ -1.83
USP54-217ENST00000498213 ADRA1AP35348 466 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 PCYT1AP49585 367 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 TTPAP49638 278 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 ENTPD1P49961 510 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 MPP1Q00013 466 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 ACVR1Q04771 509 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 WASHC5Q12768 1159 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 MSLNQ13421 630 aaPredicted RBP3.61□□□□□ -1.83
USP54-217ENST00000498213 OLIG2Q13516 323 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 SF3B4Q15427 424 aaKnown RBP eCLIP3.61□□□□□ -1.83
USP54-217ENST00000498213 ZNF585BQ52M93 769 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 HSP90AA4PQ58FG1 418 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 ARL13AQ5H913 290 aaPredicted RBP3.61□□□□□ -1.83
USP54-217ENST00000498213 TXNRD3NBQ6F5E7 133 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 C11orf63Q6NUN7 778 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 H3F3CQ6NXT2 135 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 AFTPHQ6ULP2 937 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 FAM83HQ6ZRV2 1179 aaPredicted RBP3.61□□□□□ -1.83
USP54-217ENST00000498213 NEK10Q6ZWH5 1172 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 IGFN1Q86VF2 1251 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 GPALPP1Q8IXQ4 340 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 LMNTD2Q8IXW0 634 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 CCDC170Q8IYT3 715 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 GHDCQ8N2G8 530 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 SLC5A8Q8N695 610 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 C3orf56Q8N813 242 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 PPHLN1Q8NEY8 458 aaKnown RBP3.61□□□□□ -1.83
USP54-217ENST00000498213 GABPB2Q8TAK5 448 aaPredicted RBP3.61□□□□□ -1.83
USP54-217ENST00000498213 M1APQ8TC57 530 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 BLOC1S5Q8TDH9 187 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 METTL21AQ8WXB1 218 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 ANKRD7Q92527 254 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 RAPGEF5Q92565 580 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 MSI2Q96DH6 328 aaKnown RBP3.61□□□□□ -1.83
USP54-217ENST00000498213 CCDC42Q96M95 316 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 GPR137Q96N19 417 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 SPATA13Q96N96 652 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 OR1F2PQ96R84 312 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 OLFM1Q99784 485 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 CRB3Q9BUF7 120 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 BEX2Q9BXY8 128 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 TRIM7Q9C029 511 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 ZNF700Q9H0M5 742 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 PCBD2Q9H0N5 130 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 UGT1A7Q9HAW7 530 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 UGT1A8Q9HAW9 530 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 ZNF304Q9HCX3 659 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 FAM114A2Q9NRY5 505 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 NLE1Q9NVX2 485 aaPredicted RBP3.61□□□□□ -1.83
USP54-217ENST00000498213 RSPH14Q9UHP6 348 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 NPIPA1Q9UND3 350 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 ANKRD36A6QL64 1941 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 ABCA1O95477 2261 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 PCM1Q15154 2024 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 PCLOQ9Y6V0 5065 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 DYSFO75923 2080 aa3.61□□□□□ -1.83
USP54-217ENST00000498213 ANKRD12Q6UB98 2062 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 hCG_1818297A0A087WSY0 165 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 IGHV1-45A0A0A0MS14 117 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 LOC100653049A0A140TA62 436 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 HYKKA2RU49 373 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 MIF4GDA9UHW6 222 aaKnown RBP3.6□□□□□ -1.83
USP54-217ENST00000498213 GOLGA6L19H0YKK7 550 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 PRMT5O14744 637 aaPredicted RBP3.6□□□□□ -1.83
USP54-217ENST00000498213 DNPH1O43598 174 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 ASNA1O43681 348 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 TLX2O43763 284 aaPredicted RBP3.6□□□□□ -1.83
USP54-217ENST00000498213 SPOPO43791 374 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 CST8O60676 142 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 TMCC2O75069 709 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 MTX2O75431 263 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 KRT34O76011 436 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 LCKP06239 509 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 ANXA5P08758 320 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 ERVK-10P10266 1014 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 ERGP11308 486 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 PEPDP12955 493 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 CTNNA2P26232 953 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 GSTM2P28161 218 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 CMPK1P30085 196 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 PKLRP30613 574 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 SLC26A3P40879 764 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 LMAN1P49257 510 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 ZNF75DP51815 510 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 UBASH3AP57075 661 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 RPL15P61313 204 aaKnown RBP3.6□□□□□ -1.83
USP54-217ENST00000498213 PPP1CAP62136 330 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 CDK16Q00536 496 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms