RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 OR6C75A6NL08 312 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 RFXAPO00287 272 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 CHST10O43529 356 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 IRF1P10914 325 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 KELP23276 732 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 ACSL1P33121 698 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 TPMTP51580 245 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 PTSQ03393 145 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 SHEQ5VZ18 495 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 FAM180BQ6P0A1 224 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 KANSL1Q7Z3B3 1105 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 LINC00518Q8N0U6 118 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 OR2T35Q8NGX2 323 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 OR56A3Q8NH54 315 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 SPRYD4Q8WW59 207 aaPredicted RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 FOXJ1Q92949 421 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 NEIL2Q969S2 332 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 VOPP1Q96AW1 172 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 KCTD12Q96CX2 325 aaKnown RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 NEURL3Q96EH8 262 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 SGTBQ96EQ0 304 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 CACNG6Q9BXT2 260 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 MS4A7Q9GZW8 240 aaPredicted RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 SMG9Q9H0W8 520 aaKnown RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 LDAHQ9H6V9 325 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 MED9Q9NWA0 146 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 TAAR2Q9P1P5 351 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 HCN3Q9P1Z3 774 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 COPZ2Q9P299 210 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 POMT2Q9UKY4 750 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 PPIEQ9UNP9 301 aaKnown RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 ICKQ9UPZ9 632 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 TMEM5Q9Y2B1 443 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 SLC22A23A1A5C7 686 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 ANHXE9PGG2 379 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 SGTAO43765 313 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 TBL1XO60907 577 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 MTX2O75431 263 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 TOXO94900 526 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 PEPDP12955 493 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 UGT2B7P16662 529 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 SDHBP21912 280 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 IMPA1P29218 277 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 LCN1P31025 176 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 SELENOPP49908 381 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 CCR6P51684 374 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 GPR17Q13304 367 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 PYHIN1Q6K0P9 492 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 SLC27A4Q6P1M0 643 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 TMPRSS11BQ86T26 416 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 KLHL36Q8N4N3 616 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 DCAF4L2Q8NA75 395 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 FBXO15Q8NCQ5 510 aaPredicted RBP10.07□□□□□ -0.8
USP54-204ENST00000422491 OR52N1Q8NH53 320 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 POF1BQ8WVV4 589 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 MRPS31Q92665 395 aaKnown RBP10.07□□□□□ -0.8
USP54-204ENST00000422491 RAB8BQ92930 207 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 YIPF5Q969M3 257 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 SARGQ9BW04 601 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 ZNF436Q9C0F3 470 aaPredicted RBP10.07□□□□□ -0.8
USP54-204ENST00000422491 SLC45A1Q9Y2W3 748 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 Q9Y3F1 56 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 DOCK3Q8IZD9 2030 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 SCN10AQ9Y5Y9 1956 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 ZNF840PA6NDX5 716 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 M0R3H8 397 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 FOXE1O00358 373 aaPredicted RBP10.07□□□□□ -0.8
USP54-204ENST00000422491 ZNF593O00488 134 aaPredicted RBP10.07□□□□□ -0.8
USP54-204ENST00000422491 PI15O43692 258 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 RGS9O75916 674 aaPredicted RBP10.07□□□□□ -0.8
USP54-204ENST00000422491 UBXN7O94888 489 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 SLCO2B1O94956 709 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 SLC16A8O95907 504 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 TGFB1P01137 390 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 IGHA1P01876 353 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 IL3P08700 152 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 H2AFB2P0C5Z0 115 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 THPOP40225 353 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 CDH11P55287 796 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 B2MP61769 119 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 CLLU1OSQ5K130 101 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 RGS7BPQ6MZT1 257 aaPredicted RBP10.07□□□□□ -0.8
USP54-204ENST00000422491 WASH2PQ6VEQ5 465 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 TPRG1Q6ZUI0 275 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 IKBIPQ70UQ0 350 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 NLRC3Q7RTR2 1065 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 SIAH3Q8IW03 269 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 ASIC4Q96FT7 647 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 OR51B5Q9H339 312 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 DMRT3Q9NQL9 472 aa10.07□□□□□ -0.8
USP54-204ENST00000422491 TMEM202A6NGA9 273 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 A8MXK9 166 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 NPC1O15118 1278 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 B4GALT2O60909 372 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 HPXP02790 462 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 SHC2P98077 582 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 MAP4K2Q12851 820 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 OPCMLQ14982 345 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 STK11Q15831 433 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 CCL14Q16627 93 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms