RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ATP13A2Q9NQ11 1180 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 DUSP22Q9NRW4 184 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 P2RX2Q9UBL9 471 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 CD300AQ9UGN4 299 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 GPR55Q9Y2T6 319 aaPredicted RBP16.75■□□□□ 0.27
SDC1-203ENST00000403076 ELOVL7A1L3X0 281 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 A8MUI8 341 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 ANKRD65E5RJM6 399 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 BMP2P12643 396 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 HSD17B1P14061 328 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 GZMMP51124 257 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 NR0B1P51843 470 aaKnown RBP16.74■□□□□ 0.27
SDC1-203ENST00000403076 POU6F2P78424 691 aaPredicted RBP16.74■□□□□ 0.27
SDC1-203ENST00000403076 PSG6Q00889 435 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 RBBP4Q09028 425 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 GPAT3Q53EU6 434 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 DCAF10Q5QP82 559 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 NPSR1Q6W5P4 371 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 NET1Q7Z628 596 aaPredicted RBP16.74■□□□□ 0.27
SDC1-203ENST00000403076 ZZZ3Q8IYH5 903 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 MICU2Q8IYU8 434 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 CLEC1AQ8NC01 280 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 OR8K3Q8NH51 312 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 NUBPLQ8TB37 319 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 ADIPOR1Q96A54 375 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 CCDC124Q96CT7 223 aaKnown RBP16.74■□□□□ 0.27
SDC1-203ENST00000403076 REXO5Q96IC2 774 aaKnown RBP16.74■□□□□ 0.27
SDC1-203ENST00000403076 BTBD9Q96Q07 612 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 RAB3IPQ96QF0 476 aaPredicted RBP16.74■□□□□ 0.27
SDC1-203ENST00000403076 NXF5Q9H1B4 397 aaKnown RBP16.74■□□□□ 0.27
SDC1-203ENST00000403076 TMEM38AQ9H6F2 299 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 LIN28AQ9H9Z2 209 aaKnown RBP16.74■□□□□ 0.27
SDC1-203ENST00000403076 GIN1Q9NXP7 522 aa16.74■□□□□ 0.27
SDC1-203ENST00000403076 MED19A0JLT2 244 aaPredicted RBP16.73■□□□□ 0.27
SDC1-203ENST00000403076 GXYLT2A0PJZ3 443 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 ARGFXA6NJG6 315 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 A8MVJ9 347 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 SLC28A2O43868 658 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 GMNNO75496 209 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 SERPINA7P05543 415 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 BCHEP06276 602 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 CT45A8P0DMV1 189 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 CT45A9P0DMV2 189 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 ARAFP10398 606 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 ITGAMP11215 1152 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 DRD5P21918 477 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 MAP3K8P41279 467 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 RFX3P48380 749 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 RRADP55042 308 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 KCNJ2P63252 427 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 CDK6Q00534 326 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 SCARB2Q14108 478 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 GNA13Q14344 377 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 ADRM1Q16186 407 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 ZNF630Q2M218 657 aaPredicted RBP16.73■□□□□ 0.27
SDC1-203ENST00000403076 VMACQ2NL98 169 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 CT45A2Q5DJT8 189 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 EXOSC6Q5RKV6 272 aaKnown RBP16.73■□□□□ 0.27
SDC1-203ENST00000403076 PTOV1Q86YD1 416 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 NFKBIDQ8NI38 313 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 RMND5BQ96G75 393 aaPredicted RBP16.73■□□□□ 0.27
SDC1-203ENST00000403076 BTBD2Q9BX70 525 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 A4GALTQ9NPC4 353 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 EGFL7Q9UHF1 273 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 LIPT1Q9Y234 373 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 POLHQ9Y253 713 aa16.73■□□□□ 0.27
SDC1-203ENST00000403076 FRG2CA6NGY1 282 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 WWP2O00308 870 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 EFSO43281 561 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 SORBS2O94875 1100 aaKnown RBP16.72■□□□□ 0.27
SDC1-203ENST00000403076 STAMBPO95630 424 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 TRHRP34981 398 aaPredicted RBP16.72■□□□□ 0.27
SDC1-203ENST00000403076 EIF2S3P41091 472 aaKnown RBP16.72■□□□□ 0.27
SDC1-203ENST00000403076 HPCAP84074 193 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 Q0VFX4 171 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 CDC20Q12834 499 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 AIMP2Q13155 320 aaKnown RBP16.72■□□□□ 0.27
SDC1-203ENST00000403076 SYPL1Q16563 259 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 CRTC2Q53ET0 693 aaPredicted RBP16.72■□□□□ 0.27
SDC1-203ENST00000403076 IRAK1BP1Q5VVH5 260 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 BROXQ5VW32 411 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 TCTN3Q6NUS6 607 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 PGM2L1Q6PCE3 622 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 LRRC69Q6ZNQ3 347 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 SPACA3Q8IXA5 215 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 TAGAPQ8N103 731 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 ANKFN1Q8N957 763 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 TMEM102Q8N9M5 508 aaPredicted RBP16.72■□□□□ 0.27
SDC1-203ENST00000403076 OR4N2Q8NGD1 307 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 SLC38A5Q8WUX1 472 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 HOXB13Q92826 284 aaPredicted RBP16.72■□□□□ 0.27
SDC1-203ENST00000403076 TP53INP1Q96A56 240 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 THOC3Q96J01 351 aaKnown RBP16.72■□□□□ 0.27
SDC1-203ENST00000403076 CBLCQ9ULV8 474 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 AKAP13Q12802 2813 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 CEP295Q9C0D2 2601 aa16.72■□□□□ 0.27
SDC1-203ENST00000403076 CIB2O75838 187 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 AK1P00568 194 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 TFPTP0C1Z6 253 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 NQO1P15559 274 aaKnown RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms