RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 PNMA8CA0A1B0GUJ8 204 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 PTGES3LE9PB15 166 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 F5H5K5 113 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 JRKO75564 520 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 HMGCLP35914 325 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 TAS2R39P59534 338 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 VBP1P61758 197 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 ANKRD34AQ69YU3 496 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 ZNF574Q6ZN55 896 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 CPEB2Q7Z5Q1 589 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 ALG3Q92685 438 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 ANKRD27Q96NW4 1050 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 ZNF442Q9H7R0 627 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 C11orf16Q9NQ32 467 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 DNAJC27Q9NZQ0 273 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 INTS6Q9UL03 887 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 HDAC3O15379 428 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 CHP2O43745 196 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 VHLP40337 213 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 MEOX1P50221 254 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 MOGSQ13724 837 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 MBTPS1Q14703 1052 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 NANOGP8Q6NSW7 305 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 ARHGAP11AQ6P4F7 1023 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 SCUBE1Q8IWY4 988 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 CDRT15Q96T59 188 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 GPR87Q9BY21 358 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 SLC5A7Q9GZV3 580 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 VRTNQ9H8Y1 702 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 BARX1Q9HBU1 254 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 TESMINQ9Y4I5 508 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 CLCA1A8K7I4 914 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 PGRP06401 933 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 ALDH3A2P51648 485 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 TPTEP56180 551 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 RAB38P57729 211 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 MRPS35P82673 323 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 PLA2G7Q13093 441 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 PLEKHN1Q494U1 663 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 GRHL2Q6ISB3 625 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 ASCC1Q8N9N2 400 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 GLB1L3Q8NCI6 653 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 MYDGFQ969H8 173 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 C6orf62Q9GZU0 229 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 DUSP15Q9H1R2 295 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 FBXL4Q9UKA2 621 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 ZNF346Q9UL40 294 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 MYH2Q9UKX2 1941 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 HMGN1P05114 100 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 GABRA1P14867 456 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 S1PR1P21453 382 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 GABRB2P47870 512 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 PGBD2Q6P3X8 592 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 B3GNT6Q6ZMB0 384 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 RORBQ92753 470 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 SEC16BQ96JE7 1060 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 PDLIM2Q96JY6 352 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 MACROD1Q9BQ69 325 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 SLC40A1Q9NP59 571 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 MYNNQ9NPC7 610 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 MBNL1Q9NR56 388 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 CSNK1G3Q9Y6M4 447 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 ZNF814B7Z6K7 855 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 ARPC2O15144 300 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 FMO6PO60774 539 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 EDNRAP25101 427 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 S100A7P31151 101 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 KCNAB2Q13303 367 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 ZXDCQ2QGD7 858 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 MANEALQ5VSG8 457 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 OR4F3Q6IEY1 312 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 POU5F2Q8N7G0 328 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 CT55Q8WUE5 264 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 OR4K3Q96R72 315 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 TM9SF2Q99805 663 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 REEP4Q9H6H4 257 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 PRAMEF25A6NGN4 478 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 OR7A10O76100 309 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 FOLH1Q04609 750 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 SLC34A3Q8N130 599 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 IMP4Q96G21 291 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 LRRC61Q9BV99 259 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 HAO2Q9NYQ3 351 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 STYXL1Q9Y6J8 313 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 SLC33A1O00400 549 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 PIAS1O75925 651 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 PRKCAP17252 672 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 SLC35A1P78382 337 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 ADGRE1Q14246 886 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 CDKL4Q5MAI5 379 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 FCRL6Q6DN72 434 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 STX12Q86Y82 276 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 ZZZ3Q8IYH5 903 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 STT3BQ8TCJ2 826 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 FGF22Q9HCT0 170 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 SPAG4Q9NPE6 437 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 PACSIN3Q9UKS6 424 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 CBLCQ9ULV8 474 aa8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 YARS2Q9Y2Z4 477 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-202ENST00000381753 TSC22D4Q9Y3Q8 395 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms