RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 RNASE12Q5GAN4 147 aaKnown RBP13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 CCNJQ5T5M9 372 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 TSPYL5Q86VY4 417 aaPredicted RBP13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 KLHDC8BQ8IXV7 354 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 IZUMO1Q8IYV9 350 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 KCMF1Q9P0J7 381 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 ABCD2Q9UBJ2 740 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 HCN2Q9UL51 889 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 SBF1O95248 1867 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 CNOT1A5YKK6 2376 aaKnown RBP13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 ARID2Q68CP9 1835 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 A6NL46 340 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 PLOD3O60568 738 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 AHSA1O95433 338 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 MT-ND2P03891 347 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 CD27P26842 260 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 NR4A2P43354 598 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 SERTAD2Q14140 314 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 TSTQ16762 297 aaKnown RBP13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 ADAMTS18Q8TE60 1221 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 TFAP2CQ92754 450 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 ITPAQ9BY32 194 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 IL20RAQ9UHF4 553 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 BRCA1P38398 1863 aaKnown RBP13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 KIF13BQ9NQT8 1826 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 RLFQ13129 1914 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 NPIPA5A0A0B4J1W7 369 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 A0A1B0GVT2 93 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 NPIPA7E9PJI5 369 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 H3BMQ9 156 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 FXYD1O00168 92 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 PLRG1O43660 514 aaKnown RBP13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 RENP00797 406 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 NPIPA8P0DM63 369 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 ARAFP10398 606 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 RPS3AP61247 264 aaKnown RBP13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 CSTF1Q05048 431 aaKnown RBP13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 LCN1P1Q5VSP4 162 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 CRELD1Q96HD1 420 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 DIRAS2Q96HU8 199 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 COG8Q96MW5 612 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 MAP3K3Q99759 626 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 DCSTAMPQ9H295 470 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 NMNAT1Q9HAN9 279 aaPredicted RBP13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 ERVK-19Q9WJR5 959 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 ARID1AO14497 2285 aa13.37□□□□□ -0.27
SHROOM1-203ENST00000378679 SRPX2O60687 465 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 ADAP00813 363 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 ZNF823P16415 610 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 AFF3P51826 1226 aaKnown RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 NFATC3Q12968 1075 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 FAM71E1Q6IPT2 247 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 FAM131AQ6UXB0 335 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 C16orf58Q96GQ5 468 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 S100A13Q99584 98 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 LPAR4Q99677 370 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 RACGAP1Q9H0H5 632 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 ASIC5Q9NY37 505 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 NOTOA8MTQ0 251 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 SLC1A7O00341 560 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 SLC22A1O15245 554 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 STSP08842 583 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 GPX2P18283 190 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 SLC6A6P31641 620 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 CNR2P34972 360 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 RORAP35398 523 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 OPRL1P41146 370 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 OR1D4P47884 311 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 VLDLRP98155 873 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 ACY1Q03154 408 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 DLX2Q07687 328 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 ARL9Q6T311 187 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 NRMQ8IXM6 262 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 KLHL36Q8N4N3 616 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 CREB3L4Q8TEY5 395 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 LINC00615Q96LM1 132 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 TMEM121BQ9BXQ6 578 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 SDHAF3Q9NRP4 125 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 TDRD15B5MCY1 1934 aaKnown RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 DICER1Q9UPY3 1922 aaKnown RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 GAPDHSO14556 408 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 POLR1CO15160 346 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 ETHE1O95571 254 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 CPMP14384 443 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 ZNF24P17028 368 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 ARPC4P59998 168 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 CRYZQ08257 329 aaKnown RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 MICAQ29983 383 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 COX20Q5RI15 118 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 TMEM102Q8N9M5 508 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 OR2T33Q8NG76 320 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 OR51G2Q8NGK0 314 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 SLC38A5Q8WUX1 472 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 CDS1Q92903 461 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 TEX101Q9BY14 249 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 EP300Q09472 2414 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 HTR3EA5X5Y0 456 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 LRIT2A6NDA9 550 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 PEX12O00623 359 aa13.36□□□□□ -0.27
SHROOM1-203ENST00000378679 PRAMEF2O60811 474 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms