RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ARHGDIBP52566 201 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 WASH2PQ6VEQ5 465 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 TMPRSS12Q86WS5 348 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 BEST3Q8N1M1 668 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 KCT2Q8NC54 265 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 OR8S1Q8NH09 359 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 HCAR2Q8TDS4 363 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 SLC35B4Q969S0 331 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 NEIL2Q969S2 332 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 BCL2L14Q9BZR8 327 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 HOXD1Q9GZZ0 328 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 LTB4R2Q9NPC1 389 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 LAMP5Q9UJQ1 280 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 C13orf42A0A1B0GVH6 325 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 OR2G6Q5TZ20 316 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 TMEM107Q6UX40 140 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 OR5W2Q8NH69 310 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 KCTD12Q96CX2 325 aaKnown RBP18.29■□□□□ 0.52
USP48-201ENST00000308271 TDP1Q9NUW8 608 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 SLCO3A1Q9UIG8 710 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 RORAP35398 523 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 MMP12P39900 470 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 FAM189A2Q15884 450 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 PODNL1Q6PEZ8 512 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 SAV1Q9H4B6 383 aaPredicted RBP18.29■□□□□ 0.52
USP48-201ENST00000308271 NDUFAF4Q9P032 175 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 DLEC1Q9Y238 1755 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 EDDM13A0A1B0GTR0 161 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 GXYLT2A0PJZ3 443 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 CYB5AP00167 134 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 GIFP27352 417 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 S100GP29377 79 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 AIMP2Q13155 320 aaKnown RBP18.29■□□□□ 0.52
USP48-201ENST00000308271 RTP2Q5QGT7 225 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 SAMD8Q96LT4 415 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 NIPSNAP1Q9BPW8 284 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 NTN4Q9HB63 628 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 Q9N2J8 555 aa18.29■□□□□ 0.52
USP48-201ENST00000308271 AFF1P51825 1210 aaKnown RBP18.28■□□□□ 0.52
USP48-201ENST00000308271 TEKQ02763 1124 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 ARFRP1Q13795 201 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 AUTS2Q8WXX7 1259 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 CNN2Q99439 309 aaKnown RBP18.28■□□□□ 0.52
USP48-201ENST00000308271 PINK1Q9BXM7 581 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 METTL8Q9H825 291 aaKnown RBP18.28■□□□□ 0.52
USP48-201ENST00000308271 RASD1Q9Y272 281 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 FARSAQ9Y285 508 aaKnown RBP18.28■□□□□ 0.52
USP48-201ENST00000308271 ARPC5O15511 151 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 VEGFDO43915 354 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 SOD2P04179 222 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 MSL3P1P0C860 447 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 TGM1P22735 817 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 IGFALSP35858 605 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 RPS19P39019 145 aaKnown RBP18.28■□□□□ 0.52
USP48-201ENST00000308271 MINDY4Q4G0A6 757 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 GLT8D1Q68CQ7 371 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 XAF1Q6GPH4 301 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 OR4C11Q6IEV9 310 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 SLC6A16Q9GZN6 736 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.28■□□□□ 0.52
USP48-201ENST00000308271 CSNK1G3Q9Y6M4 447 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 ALDOBP05062 364 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 ZNF865P0CJ78 1059 aaPredicted RBP18.28■□□□□ 0.52
USP48-201ENST00000308271 HTR3AP46098 478 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 MAP4K2Q12851 820 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 ASAH1Q13510 395 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 ZNF550Q7Z398 422 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 FAM124AQ86V42 546 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 LRRC56Q8IYG6 542 aaPredicted RBP18.28■□□□□ 0.52
USP48-201ENST00000308271 THAP4Q8WY91 577 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 SLC41A3Q96GZ6 507 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 DIMT1Q9UNQ2 313 aaKnown RBP18.28■□□□□ 0.52
USP48-201ENST00000308271 MYO10Q9HD67 2058 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 UBXN7O94888 489 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 ASGR2P07307 311 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 POU6F2P78424 691 aaPredicted RBP18.28■□□□□ 0.52
USP48-201ENST00000308271 LRRC37A5PQ49AS3 106 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 LY6G5CQ5SRR4 150 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 ANKRD34AQ69YU3 496 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 FAM180BQ6P0A1 224 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 LINC01465Q8N7H1 131 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 ZNF527Q8NB42 609 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 FBXO15Q8NCQ5 510 aaPredicted RBP18.28■□□□□ 0.52
USP48-201ENST00000308271 OR2L3Q8NG85 312 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 FIBINQ8TAL6 211 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 FKBP14Q9NWM8 211 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 GLTPQ9NZD2 209 aa18.28■□□□□ 0.52
USP48-201ENST00000308271 BLOC1S5-TXNDC5H3BN57 136 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 SC5DO75845 299 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 GATBO75879 557 aaKnown RBP18.27■□□□□ 0.52
USP48-201ENST00000308271 PAK4O96013 591 aaPredicted RBP18.27■□□□□ 0.52
USP48-201ENST00000308271 APOC1P02654 83 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 PDGFAP04085 211 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 PSPHP78330 225 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 PRKCZQ05513 592 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 POLDIP3Q9BY77 421 aaKnown RBP18.27■□□□□ 0.52
USP48-201ENST00000308271 MKL2Q9ULH7 1088 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 TRAPPC13A5PLN9 417 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 H0YIV9 168 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 GABRPO00591 440 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms