RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PTNP21246 168 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 ID2Q02363 134 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 CD300CQ08708 224 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 PLEKHG7Q6ZR37 379 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 PRICKLE2Q7Z3G6 844 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 SLC22A16Q86VW1 577 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 SFTPA2Q8IWL1 248 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 OR2A14Q96R47 310 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 EXOSC4Q9NPD3 245 aaKnown RBP18.81■□□□□ 0.6
VPS53-201ENST00000291074 GSAPA4D1B5 854 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 TBX1O43435 398 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 SLC35G6P0C7Q6 338 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 CPN2P22792 545 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 RHAGQ02094 409 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 TNFRSF17Q02223 184 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 COX10Q12887 443 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 SPHARQ15513 63 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 MEDAGQ5VYS4 303 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 CD300LDQ6UXZ3 194 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 OR8D4Q8NGM9 314 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 CDS1Q92903 461 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 ARHGDIGQ99819 225 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 POLDIP3Q9BY77 421 aaKnown RBP18.8■□□□□ 0.6
VPS53-201ENST00000291074 ACTRT3Q9BYD9 372 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 SLC13A4Q9UKG4 626 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 NCKAP1Q9Y2A7 1128 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 GPR52Q9Y2T5 361 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 CYP7B1O75881 506 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 SCG5P05408 212 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 ACADMP11310 421 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 UGT2B7P16662 529 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 RUNX2Q13950 521 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 OCLNQ16625 522 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 SLC9A6Q92581 669 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 FAM46AQ96IP4 442 aaKnown RBP18.8■□□□□ 0.6
VPS53-201ENST00000291074 OR2A5Q96R48 311 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 GIN1Q9NXP7 522 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 TRIOO75962 3097 aa18.8■□□□□ 0.6
VPS53-201ENST00000291074 LOC105369274A0A096LPK9 316 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 LOC102723532A0A0G2JNH3 316 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 FAM170BA6NMN3 283 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 NDUFV2P19404 249 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 NDUFS1P28331 727 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 CDK5Q00535 292 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 SLC13A2Q13183 592 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 GPR18Q14330 331 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 NCF4Q15080 339 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 ENTPD8Q5MY95 495 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 ATAD3BQ5T9A4 648 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 TMEM92Q6UXU6 159 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 OR4N4Q8N0Y3 316 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 FAM83FQ8NEG4 500 aaPredicted RBP18.79■□□□□ 0.6
VPS53-201ENST00000291074 ADAMTS15Q8TE58 950 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 DIO2Q92813 273 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 TRMT61AQ96FX7 289 aaKnown RBP18.79■□□□□ 0.6
VPS53-201ENST00000291074 TRNT1Q96Q11 434 aaKnown RBP18.79■□□□□ 0.6
VPS53-201ENST00000291074 CNPPD1Q9BV87 410 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 KCMF1Q9P0J7 381 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 ANKMY1Q9P2S6 941 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 CARD8Q9Y2G2 431 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 MRPS2Q9Y399 296 aaKnown RBP18.79■□□□□ 0.6
VPS53-201ENST00000291074 A6NCN8 305 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 OR6C74A6NCV1 312 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 PVRP15151 417 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 SNAPC1Q16533 368 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 NDUFA9Q16795 377 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 FCRL6Q6DN72 434 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 LRRC25Q8N386 305 aaPredicted RBP18.79■□□□□ 0.6
VPS53-201ENST00000291074 FAM26EQ8N5C1 309 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 FRMD1Q8N878 549 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 NT5CQ8TCD5 201 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 ZNF582Q96NG8 517 aaPredicted RBP18.79■□□□□ 0.6
VPS53-201ENST00000291074 KCNS3Q9BQ31 491 aa18.79■□□□□ 0.6
VPS53-201ENST00000291074 PRUNE2Q8WUY3 3088 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 UPK1BO75841 260 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 GTF2E2P29084 291 aaKnown RBP18.78■□□□□ 0.6
VPS53-201ENST00000291074 SEPHS1P49903 392 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 ALG11Q2TAA5 492 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 CLEC12AQ5QGZ9 265 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 PRAMEF8Q5VWM4 474 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 PRAMEF7Q5VXH5 474 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 MFSD12Q6NUT3 480 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 PRSS41Q7RTY9 318 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 NANOGP1Q8N7R0 232 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 OR52I1Q8NGK6 324 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 OR52P1PQ8NH57 321 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 FGF11Q92914 225 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 MND1Q9BWT6 205 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 CAB39Q9Y376 341 aaPredicted RBP18.78■□□□□ 0.6
VPS53-201ENST00000291074 CENPVL1A0A0U1RR11 272 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 SYT5O00445 386 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 ASNA1O43681 348 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 HOXC4P09017 264 aaPredicted RBP18.78■□□□□ 0.6
VPS53-201ENST00000291074 HTR4Q13639 388 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 TIMM50Q3ZCQ8 353 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 ZNF730Q6ZMV8 503 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 LYSMD2Q8IV50 215 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 NKAIN4Q8IVV8 208 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 POLR2J2Q9GZM3 115 aaKnown RBP18.78■□□□□ 0.6
VPS53-201ENST00000291074 MCOLN1Q9GZU1 580 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms