RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 LRFN4Q6PJG9 635 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 LCTLQ6UWM7 567 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 METTL27Q8N6F8 245 aaPredicted RBP10.2□□□□□ -0.78
CD44-201ENST00000263398 DHRS1Q96LJ7 313 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 URM1Q9BTM9 101 aaKnown RBP10.2□□□□□ -0.78
CD44-201ENST00000263398 MTG2Q9H4K7 406 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 TAS2R8Q9NYW2 309 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 MGAT4CQ9UBM8 478 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 C12orf71A8MTZ7 269 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 NPC1O15118 1278 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 CASC3O15234 703 aaKnown RBP10.2□□□□□ -0.78
CD44-201ENST00000263398 UPK1BO75841 260 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 ATXN1LP0C7T5 689 aaKnown RBP10.2□□□□□ -0.78
CD44-201ENST00000263398 PET100P0DJ07 73 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 CCR7P32248 378 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 CTBP2P56545 445 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 APOFQ13790 326 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 CCSAPQ6IQ19 270 aaPredicted RBP10.2□□□□□ -0.78
CD44-201ENST00000263398 CBLL1Q75N03 491 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 GPAT4Q86UL3 456 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 RETREG3Q86VR2 466 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 EGFL6Q8IUX8 553 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 CPXM2Q8N436 756 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 DTX3Q8N9I9 347 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 SYT14Q8NB59 555 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 OR5AR1Q8NGP9 310 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 STOML3Q8TAV4 291 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 CPEB1Q9BZB8 566 aaKnown RBP10.2□□□□□ -0.78
CD44-201ENST00000263398 FBXL3Q9UKT7 428 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 F5H0A9 414 aaPredicted RBP10.2□□□□□ -0.78
CD44-201ENST00000263398 TP53I11O14683 189 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 SCO2O43819 266 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 ERCC1P07992 297 aaPredicted RBP10.2□□□□□ -0.78
CD44-201ENST00000263398 ITGAMP11215 1152 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 NTSR1P30989 418 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 RGRP47804 291 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 SOX9P48436 509 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 FNTBP49356 437 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 AFF1P51825 1210 aaKnown RBP10.2□□□□□ -0.78
CD44-201ENST00000263398 EMX1Q04741 257 aaPredicted RBP10.2□□□□□ -0.78
CD44-201ENST00000263398 C1orf61Q13536 156 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 FRMPD2BQ6IN97 320 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 FAM180BQ6P0A1 224 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 CPOQ8IVL8 374 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 FAM217AQ8IXS0 508 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 VWA5B2Q8N398 1253 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 TOR1AIP2Q8NFQ8 470 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 OR4K13Q8NH42 304 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 NDNFQ8TB73 568 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 ADAMTS19Q8TE59 1207 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 ADAMTS18Q8TE60 1221 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 SLC39A13Q96H72 371 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 EGLN2Q96KS0 407 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 ARL6Q9H0F7 186 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 R3HDMLQ9H3Y0 253 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 RNF186Q9NXI6 227 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 KCNIP3Q9Y2W7 256 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 OR1A2Q9Y585 309 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 GABRR3A8MPY1 467 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 FMO6PO60774 539 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 CAPZA1P52907 286 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 ART1P52961 327 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 ALG10Q5BKT4 473 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 SHFQ7M4L6 423 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 LSMEM2Q8N112 164 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 CDRT4Q8N9R6 151 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 CNOT2Q9NZN8 540 aaKnown RBP10.19□□□□□ -0.78
CD44-201ENST00000263398 KLHL21Q9UJP4 597 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 PADI2Q9Y2J8 665 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 H7C2Y5 167 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 HSPA12AO43301 675 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 FARS2O95363 451 aaKnown RBP10.19□□□□□ -0.78
CD44-201ENST00000263398 HEXBP07686 556 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 CSNK1DP48730 415 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 RIDAP52758 137 aaKnown RBP10.19□□□□□ -0.78
CD44-201ENST00000263398 LRRC37A5PQ49AS3 106 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 RPS26P11Q5JNZ5 115 aaPredicted RBP10.19□□□□□ -0.78
CD44-201ENST00000263398 WDR45BQ5MNZ6 344 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 DCDC5Q6ZRR9 648 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 WDR20Q8TBZ3 569 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 FOXJ1Q92949 421 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 CIDECQ96AQ7 238 aaPredicted RBP10.19□□□□□ -0.78
CD44-201ENST00000263398 SAMD8Q96LT4 415 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 MS4A4EQ96PG1 132 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 ZNF350Q9GZX5 532 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 KATNBL1Q9H079 304 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 SYT4Q9H2B2 425 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 LINC00597Q9H2U6 94 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 VNN3Q9NY84 501 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 CHD4Q14839 1912 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 A0A1W2PPL8 197 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 PEX12O00623 359 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 LYRM1O43325 122 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 NDUFB2O95178 105 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 CDK1P06493 297 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 RNF144AP50876 292 aaPredicted RBP10.19□□□□□ -0.78
CD44-201ENST00000263398 SHC2P98077 582 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 AIMP2Q13155 320 aaKnown RBP10.19□□□□□ -0.78
CD44-201ENST00000263398 ARHGAP19Q14CB8 494 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms