RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TAS2R7Q9NYW3 318 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 H0YIG0 161 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 RNF144AP50876 292 aaPredicted RBP10.86□□□□□ -0.67
VPS4A-201ENST00000254950 PHC1P78364 1004 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 CHRNEQ04844 493 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 PCDH1Q08174 1060 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 JAZF1Q86VZ6 243 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 OR14A16Q8NHC5 309 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 TMCO6Q96DC7 493 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 SCARF2Q96GP6 870 aaPredicted RBP10.86□□□□□ -0.67
VPS4A-201ENST00000254950 NECAB3Q96P71 396 aaPredicted RBP10.86□□□□□ -0.67
VPS4A-201ENST00000254950 TSSK6Q9BXA6 273 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 FGF17O60258 216 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 BCL10O95999 233 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 FOLR3P41439 243 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 E2F1Q01094 437 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 PLK5Q496M5 336 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 NKAIN1Q4KMZ8 207 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF793Q6ZN11 406 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 CHMP1BQ7LBR1 199 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 NUP54Q7Z3B4 507 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 CA13Q8N1Q1 262 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 RCBTB1Q8NDN9 531 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 OR4K5Q8NGD3 323 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 TMEM234Q8WY98 164 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 HS6ST2Q96MM7 605 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 PHF12Q96QT6 1004 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 COPS4Q9BT78 406 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 SOX17Q9H6I2 414 aaPredicted RBP10.86□□□□□ -0.67
VPS4A-201ENST00000254950 ERVMER34-1Q9H9K5 563 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 AMBNQ9NP70 447 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 KCMF1Q9P0J7 381 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 TRAPPC13A5PLN9 417 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 ASPDHA6ND91 283 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 FADS2O95864 444 aaKnown RBP10.85□□□□□ -0.67
VPS4A-201ENST00000254950 ERGP11308 486 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 PRG2P13727 222 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 FMO3P31513 532 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 OTX2P32243 289 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 DCAF7P61962 342 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 DYNC1I2Q13409 638 aaKnown RBP10.85□□□□□ -0.67
VPS4A-201ENST00000254950 PIN1Q13526 163 aaPredicted RBP10.85□□□□□ -0.67
VPS4A-201ENST00000254950 GAS6Q14393 721 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 GK3PQ14409 553 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 MED22Q15528 200 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 BTBD16Q32M84 506 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 DCAF12Q5T6F0 453 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 SAXO2Q658L1 398 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 PMS2CLQ68D20 193 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 C16orf87Q6PH81 154 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 PIK3R3Q92569 461 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 MUS81Q96NY9 551 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF559Q9BR84 538 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 ULBP3Q9BZM4 244 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 PTGES2Q9H7Z7 377 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 MTCL1Q9Y4B5 1905 aaKnown RBP10.85□□□□□ -0.67
VPS4A-201ENST00000254950 ENO4A6NNW6 628 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 TBX19O60806 448 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 CPNE3O75131 537 aaKnown RBP10.85□□□□□ -0.67
VPS4A-201ENST00000254950 MFN2O95140 757 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 ADAP00813 363 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 PDE7AQ13946 482 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.85□□□□□ -0.674e-6■■■□□ 18.2
VPS4A-201ENST00000254950 DGLUCYQ7Z3D6 616 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 CARFQ8N187 725 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 MARVELD2Q8N4S9 558 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 SLC5A8Q8N695 610 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 IPCEF1Q8WWN9 437 aaPredicted RBP10.85□□□□□ -0.67
VPS4A-201ENST00000254950 HHATLQ9HCP6 504 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 SIRT5Q9NXA8 310 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 ASB4Q9Y574 426 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 EFCAB10A6NFE3 127 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 AHSA1O95433 338 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 HOXB3P14651 431 aaPredicted RBP10.85□□□□□ -0.67
VPS4A-201ENST00000254950 CD1EP15812 388 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 SOX6P35712 828 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 NPRL3Q12980 569 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 ZIC1Q15915 447 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 LILRA2Q8N149 483 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 SCAIQ8N9R8 606 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 POMGNT2Q8NAT1 580 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 SLC16A11Q8NCK7 471 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 WDR36Q8NI36 951 aaKnown RBP10.85□□□□□ -0.67
VPS4A-201ENST00000254950 OSTF1Q92882 214 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 CLDN23Q96B33 292 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 CNRIP1Q96F85 164 aaPredicted RBP10.85□□□□□ -0.67
VPS4A-201ENST00000254950 GUCD1Q96NT3 240 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 DCUN1D5Q9BTE7 237 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 NECTIN3Q9NQS3 549 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 OLAHQ9NV23 265 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 NXT1Q9UKK6 140 aaKnown RBP10.85□□□□□ -0.67
VPS4A-201ENST00000254950 RPL36Q9Y3U8 105 aaKnown RBP10.85□□□□□ -0.67
VPS4A-201ENST00000254950 NOTCH4Q99466 2003 aa10.85□□□□□ -0.67
VPS4A-201ENST00000254950 NPIPA5A0A0B4J1W7 369 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 A0A1B0GTQ1 180 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 EFCAB9A8MZ26 197 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 NPIPA7E9PJI5 369 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 FRS3O43559 492 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 NPIPA8P0DM63 369 aa10.84□□□□□ -0.67
VPS4A-201ENST00000254950 GPR143P51810 404 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms