RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 RSU1Q15404 277 aa10.8□□□□□ -0.68
CLIP1-219ENST00000620786 RPS26P11Q5JNZ5 115 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-219ENST00000620786 ABHD12BQ7Z5M8 362 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-219ENST00000620786 MRPL38Q96DV4 380 aaKnown RBP10.8□□□□□ -0.68
CLIP1-219ENST00000620786 ZIC5Q96T25 663 aa10.8□□□□□ -0.68
CLIP1-219ENST00000620786 URM1Q9BTM9 101 aaKnown RBP10.8□□□□□ -0.68
CLIP1-219ENST00000620786 TAS2R10Q9NYW0 307 aa10.8□□□□□ -0.68
CLIP1-219ENST00000620786 RRP8O43159 456 aaKnown RBP10.79□□□□□ -0.68
CLIP1-219ENST00000620786 MC3RP41968 323 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 FRKP42685 505 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-219ENST00000620786 MAN2A2P49641 1150 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 E2F1Q01094 437 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ENPP6Q6UWR7 440 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ZNF765Q7L2R6 523 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 CHCHD4Q8N4Q1 142 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 FAM174AQ8TBP5 190 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 FCAMRQ8WWV6 532 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 TANKQ92844 425 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 MYRFLQ96LU7 910 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 HSFX1Q9UBD0 423 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 SCN11AQ9UI33 1791 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 UBR2Q8IWV8 1755 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 LOC102723532A0A0G2JNH3 316 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 M0R129 80 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 LDB3O75112 727 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 SLC6A8P48029 635 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 CTXN1P60606 82 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ATP6AP1Q15904 470 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 C3orf38Q5JPI3 329 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ZNF709Q8N972 641 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 CITED4Q96RK1 184 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 MACROD1Q9BQ69 325 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 DMRT3Q9NQL9 472 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 FXYD6-FXYD2A0A087WZ82 144 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 CKMT1AP12532 417 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ANKDD1AQ495B1 522 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 SYCE2Q6PIF2 218 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 SECISBP2Q96T21 854 aaKnown RBP10.79□□□□□ -0.68
CLIP1-219ENST00000620786 TIMM29Q9BSF4 260 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 TWSG1Q9GZX9 223 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 FXYD6Q9H0Q3 95 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ERVK-19Q9WJR5 959 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ZNF451Q9Y4E5 1061 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 LAMB4A4D0S4 1761 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 A0A1B0GVC2 190 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 CD46P15529 392 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 CLCN2P51788 898 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ERVPABLB-1P60509 514 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ADAM17P78536 824 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 HNRNPA0Q13151 305 aaKnown RBP10.79□□□□□ -0.68
CLIP1-219ENST00000620786 BLMHQ13867 455 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 HS3ST5Q8IZT8 346 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 OR52N2Q8NGI0 321 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 OR4K13Q8NH42 304 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 SPTSSAQ969W0 71 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 WACQ9BTA9 647 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ZNF350Q9GZX5 532 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 IGSF5Q9NSI5 407 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ZNF224Q9NZL3 707 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 RGPD5Q99666 1765 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 SETD1AO15047 1707 aaKnown RBP10.79□□□□□ -0.68
CLIP1-219ENST00000620786 SMCO3A2RU48 225 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ZNF850A8MQ14 1090 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 SLC19A2O60779 497 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 PVRP15151 417 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 HTR1EP28566 365 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 TLDC1Q6P9B6 456 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ZNF584Q8IVC4 421 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 VWA5B2Q8N398 1253 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 OR9K2Q8NGE7 335 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 CD200R1Q8TD46 325 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 ARRDC3Q96B67 414 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 L3HYPDHQ96EM0 354 aa10.79□□□□□ -0.68
CLIP1-219ENST00000620786 GPN2Q9H9Y4 310 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-219ENST00000620786 SLC22A31A6NKX4 558 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 IFNGR1P15260 489 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 RBMXP38159 391 aaKnown RBP10.78□□□□□ -0.68
CLIP1-219ENST00000620786 SLC26A5P58743 744 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 PLGLAQ15195 96 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 TMEM31Q5JXX7 168 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 ZNF367Q7RTV3 350 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 CEACAM19Q7Z692 300 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 RHBDF1Q96CC6 855 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 OR51B6Q9H340 312 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 GAREM1Q9H706 876 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 ENAMQ9NRM1 1142 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 TRBV2A0A0J9YWF9 115 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 TRAPPC13A5PLN9 417 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 LRRN3E7EW58 273 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 SCRG1O75711 98 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 LAMP1P11279 417 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 UBL4AP11441 157 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 AMY2BP19961 511 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 GSTM2P28161 218 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 HOXD9P28356 352 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-219ENST00000620786 KDELR2P33947 212 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 APOFQ13790 326 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 CDRT4Q8N9R6 151 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 OR2T4Q8NH00 348 aa10.78□□□□□ -0.68
CLIP1-219ENST00000620786 SORBS1Q9BX66 1292 aaKnown RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms