RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 MS4A12Q9NXJ0 267 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 GRIP1Q9Y3R0 1128 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 LRRC72A6NJI9 287 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 SDC3O75056 442 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 GCM2O75603 506 aaPredicted RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 CDK1P06493 297 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 CERS1P27544 350 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 GPR19Q15760 415 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 C6orf120Q7Z4R8 191 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 ABI3BPQ7Z7G0 1075 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 PLPP6Q8IY26 295 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 FAM160A2Q8N612 972 aaPredicted RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 TSTD1Q8NFU3 115 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 OR8H1Q8NGG4 311 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 SMPDL3AQ92484 453 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 DOHHQ9BU89 302 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 C11orf54Q9H0W9 315 aaPredicted RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 NPAP1Q9NZP6 1156 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 CCDC59Q9P031 241 aaKnown RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 ZNF282Q9UDV7 671 aaPredicted RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 SNX7Q9UNH6 387 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 SPAG17Q6Q759 2223 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 M0R3H8 397 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 VEGFDO43915 354 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 ATF4P18848 351 aaPredicted RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 RPS19P39019 145 aaKnown RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 SNRPNP63162 240 aaKnown RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 BTN3A2P78410 334 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 MTAPQ13126 283 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 PYDC2Q56P42 97 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 NDUFAF5Q5TEU4 345 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 DNAJC22Q8N4W6 341 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 OR5K2Q8NHB8 316 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 MGLLQ99685 303 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 HDHD5Q9BXW7 423 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 SOHLH2Q9NX45 425 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 TBC1D29Q9UFV1 150 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 CLCA1A8K7I4 914 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 PDPK1O15530 556 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 CCT3P49368 545 aaKnown RBP13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 DSTNP60981 165 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 PDZK1Q5T2W1 519 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 C10orf62Q5T681 223 aaPredicted RBP13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 METRNLQ641Q3 311 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 TMEM107Q6UX40 140 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 CBLL1Q75N03 491 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 LRRC20Q8TCA0 184 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 TMEM203Q969S6 136 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 SGPP1Q9BX95 441 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 MAGIXQ9H6Y5 334 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 ZNF556Q9HAH1 456 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 NDUFAF4Q9P032 175 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 MN1Q10571 1320 aaPredicted RBP13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 OBSL1O75147 1896 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 GPR37L1O60883 481 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 PTGS2P35354 604 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 KCNJ10P78508 379 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 RUNX1T1Q06455 604 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 TBCEQ15813 527 aaPredicted RBP13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 AMZ1Q400G9 498 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 PRRT3Q5FWE3 981 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 TRMT61AQ96FX7 289 aaKnown RBP13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 TMEM19Q96HH6 336 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 SRMSQ9H3Y6 488 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 SEC14L3Q9UDX4 400 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 CD207Q9UJ71 328 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 CFL2Q9Y281 166 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 UNC13CQ8NB66 2214 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 TSPAN11A1L157 253 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 OR2W5A6NFC9 320 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 GPX5O75715 221 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 OR2B3O76000 313 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 GADD45GO95257 159 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 CDONQ4KMG0 1287 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 DEFB134Q4QY38 66 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 IFI44LQ53G44 452 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 TIGD4Q8IY51 512 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 DNAJC5GQ8N7S2 189 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 AQP11Q8NBQ7 271 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 SLC9A6Q92581 669 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 TM4SF18Q96CE8 201 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 FRMD6Q96NE9 622 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 TEFMQ96QE5 360 aaKnown RBP13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 BRF2Q9HAW0 419 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 KCNN3Q9UGI6 736 aa13.65□□□□□ -0.22
SHROOM1-208ENST00000617339 ABCA7Q8IZY2 2146 aa13.65□□□□□ -0.23
SHROOM1-208ENST00000617339 ANHXE9PGG2 379 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 UGDHO60701 494 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 SNRNP200O75643 2136 aaKnown RBP13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 CTHP32929 405 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 SELENOWP63302 87 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 FAPQ12884 760 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 QPRTQ15274 297 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 DEFB110Q30KQ9 67 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 SLC38A5Q8WUX1 472 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 ASB15Q8WXK1 588 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 DACT3Q96B18 629 aaPredicted RBP13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 DIRAS2Q96HU8 199 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 C6orf106Q9H6K1 298 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms